Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.3e-120 436.4 216 100.0
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.3e-120 436.4 216 100.0
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.3e-120 436.4 216 100.0
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.0e-114 416.8 216 93.5
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 9.7e-113 410.2 216 93.1
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 7.7e-110 400.6 208 93.3
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 8.5e-109 397.1 216 89.8
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 7.4e-105 384.0 216 83.8
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.8e-104 382.1 216 81.0
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.1e-103 377.1 216 81.9
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.0e-102 375.9 216 81.9
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.0e-101 373.6 216 81.0
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 2.9e-101 372.1 216 81.0
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.5e-100 369.8 213 82.6
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 5.5e-100 367.9 216 81.0
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 9.4e-100 367.1 216 79.6
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.7e-99 365.5 216 79.2
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 6.1e-99 364.4 216 79.6
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.0e-98 363.6 216 79.2
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 2.3e-98 362.5 216 80.1
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 4.0e-98 361.7 216 80.6
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 6.7e-98 360.9 216 78.2
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 8.8e-98 360.5 216 78.2
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 8.8e-98 360.5 216 78.2
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.5e-97 359.8 216 78.2
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.4e-97 358.2 216 77.3
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 5.7e-97 357.8 216 78.2
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 5.7e-97 357.8 216 76.4
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.3e-96 356.7 216 77.3
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.7e-96 356.3 217 77.9
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 2.2e-96 355.9 216 77.3
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 2.2e-96 355.9 216 76.9
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 2.2e-96 355.9 216 78.7
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.8e-96 355.5 216 77.8
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.7e-96 355.1 216 77.3
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 3.7e-96 355.1 216 77.3
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 6.3e-96 354.4 216 77.3
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 6.3e-96 354.4 216 76.9
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 8.2e-96 354.0 216 76.9
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 8.2e-96 354.0 215 77.2
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.1e-95 353.6 216 77.3
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.4e-95 353.2 216 76.4
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 2.4e-95 352.4 216 75.9
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 7.0e-95 350.9 216 76.4
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 9.1e-95 350.5 264 67.4
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.2e-94 350.1 217 77.4
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 2.9e-93 345.5 216 75.9
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 5.0e-93 344.7 216 74.5
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 6.5e-93 344.4 216 74.5
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 8.5e-93 344.0 216 75.0
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 8.5e-93 344.0 216 74.5
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.1e-92 343.6 216 75.0
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.1e-92 343.6 216 74.1
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.5e-92 343.2 216 74.5
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.5e-92 343.2 216 73.1
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.9e-92 342.8 216 73.6
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 3.2e-92 342.0 216 74.5
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.5e-92 341.3 216 74.5
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.7e-91 339.0 216 73.6
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.6e-91 338.6 216 74.5
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 8.0e-91 337.4 216 72.7
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.4e-90 336.7 216 73.1
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.0e-90 335.5 216 70.8
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 6.8e-90 334.3 216 70.4
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.2e-89 333.6 216 71.3
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.2e-89 333.6 216 74.1
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 2.6e-89 332.4 216 73.1
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 3.4e-89 332.0 216 74.5
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 4.4e-89 331.6 216 73.1
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 5.7e-89 331.3 216 72.7
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 3.7e-88 328.6 216 70.4
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 6.3e-88 327.8 216 69.4
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 8.3e-88 327.4 172 91.9
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.1e-87 327.0 216 69.9
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.4e-87 326.6 231 69.7
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 2.4e-87 325.9 216 70.4
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 4.1e-87 325.1 216 71.8
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 9.1e-87 323.9 216 69.9
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 7.7e-86 320.9 216 69.0
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.9e-85 318.9 216 69.4
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 8.5e-85 317.4 216 69.9
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-84 317.0 216 69.9
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.5e-84 316.6 216 66.7
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 9.4e-84 313.9 216 69.0
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.4e-84 313.9 216 69.0
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 3.6e-83 312.0 231 64.9
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.4e-82 310.1 217 68.2
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.4e-82 310.1 217 68.2
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.8e-82 309.7 217 68.2
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 2.3e-82 309.3 216 68.1
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 3.0e-82 308.9 217 68.2
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 3.0e-82 308.9 216 65.7
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.0e-82 308.9 212 67.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 4.0e-82 308.5 217 68.2
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 4.0e-82 308.5 214 65.4
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 6.8e-82 307.8 216 67.6
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 6.8e-82 307.8 216 65.3
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.2e-81 307.0 216 70.8
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 2.0e-81 306.2 217 64.1
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 4.4e-81 305.1 217 68.2
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 7.5e-81 304.3 217 64.1
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 9.8e-81 303.9 216 66.2
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 2.2e-80 302.8 195 74.4
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.2e-80 302.8 208 66.3
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.7e-80 302.0 216 64.8
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 4.9e-80 301.6 212 66.0
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 6.3e-80 301.2 216 66.2
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.8e-79 299.7 217 66.4
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.8e-79 299.7 217 66.4
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.8e-79 299.7 217 66.4
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.8e-79 299.7 217 66.4
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.8e-79 299.7 217 66.4
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 2.4e-79 299.3 216 63.9
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 4.1e-79 298.5 217 65.9
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.7e-78 295.8 216 63.0
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 3.5e-78 295.4 212 63.2
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-77 293.5 202 66.3
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 3.8e-77 292.0 223 61.0
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.3e-76 288.9 239 58.6
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-75 286.6 203 68.5
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.6e-75 286.6 172 79.1
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.1e-75 286.2 216 62.5
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.0e-74 283.9 216 61.6
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.3e-74 282.7 237 64.1
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.2e-74 281.6 216 61.1
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.2e-73 280.4 172 75.6
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-73 280.4 216 64.4
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.5e-73 280.0 249 57.4
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.4e-73 278.5 216 63.9
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 5.7e-73 278.1 210 61.0
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 4.9e-72 275.0 214 59.8
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.9e-72 275.0 194 65.5
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.1e-71 273.9 194 62.4
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.4e-71 273.5 154 84.4
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.8e-71 273.1 179 78.8
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 5.0e-69 265.0 217 58.1
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.1e-68 263.8 217 56.7
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 4.7e-67 258.5 201 59.7
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 6.8e-66 254.6 213 55.4
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 8.9e-66 254.2 216 61.1
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 5.8e-65 251.5 204 63.7
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 6.4e-64 248.1 176 67.0
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.4e-57 225.7 215 59.5
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 4.4e-57 225.3 216 55.6
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 8.3e-56 221.1 156 70.5
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.4e-49 198.7 135 66.7
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.7e-45 186.8 127 72.4
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.7e-45 186.8 126 69.0
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.6e-41 172.9 215 40.5
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 7.3e-36 154.8 199 39.2
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 4.5e-33 145.6 94 71.3
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 7.6e-33 144.8 190 38.9
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.7e-24 117.1 76 71.1
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 2.7e-22 109.8 76 61.8
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.5e-22 109.4 70 67.1
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 5.5e-15 85.5 56 67.9
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 2.7e-14 83.2 191 28.8
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 4.8e-11 72.4 68 54.4
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 8.2e-11 71.6 43 76.7
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 2.6e-09 66.6 109 33.9
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.0e-08 64.7 74 44.6
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.1e-07 61.2 45 60.0
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 9.3e-07 58.2 32 75.0


User provided reference genes

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