Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022449 Solanum tuberosum HOM05D007756 ORTHO05D009403 4.6e-21 103.6 51 100.0
Solyc02g078870.1 Solanum lycopersicum HOM05D007756 ORTHO05D009403 1.2e-18 95.5 51 92.2
PGSC0003DMG400022450 Solanum tuberosum HOM05D007756 ORTHO05D009403 1.2e-18 95.5 51 92.2
PGSC0003DMG400022448 Solanum tuberosum HOM05D007756 ORTHO05D009403 4.9e-15 83.6 49 85.7
Nitab4.5_0003114g0110 Nicotiana tabacum HOM05D007756 ORTHO05D009403 9.2e-14 79.3 49 85.7
Solyc02g078890.1 Solanum lycopersicum HOM05D007756 ORTHO05D009403 1.2e-13 79.0 49 79.6
Sopen02g023700 Solanum pennellii HOM05D007756 ORTHO05D009403 1.2e-13 79.0 49 79.6
Hma1.2p1_0144F.1_g064960 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 1.3e-10 68.9 49 71.4
Nitab4.5_0001170g0030 Nicotiana tabacum HOM05D007756 ORTHO05D009403 1.3e-10 68.9 43 83.7
Cc02_g12640 Coffea canephora HOM05D007756 ORTHO05D009403 3.6e-10 67.4 46 76.1
Cfa000371 Carpinus fangiana HOM05D007756 ORTHO05D009403 4.8e-10 67.0 47 70.2
Gohir.D10G020400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 6.2e-10 66.6 52 67.3
Gohir.D10G020250 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.4e-09 65.5 52 65.4
Gohir.A10G019600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 2.4e-09 64.7 47 66.0
Manes.16G038800 Manihot esculenta HOM05D007756 ORTHO05D009403 2.4e-09 64.7 47 70.2
Hma1.2p1_0144F.1_g064970 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 3.1e-09 64.3 50 64.0
CiPaw.09G159600 Carya illinoinensis HOM05D007756 ORTHO05D009403 5.3e-09 63.5 49 67.3
Gohir.A10G019400 Gossypium hirsutum HOM05D007756 ORTHO05D009403 5.3e-09 63.5 47 63.8
Gohir.A05G164200 Gossypium hirsutum HOM05D007756 ORTHO05D009403 1.2e-08 62.4 47 63.8
Gorai.009G172100 Gossypium raimondii HOM05D007756 ORTHO05D009403 1.2e-08 62.4 47 63.8
Potri.011G044800 Populus trichocarpa HOM05D007756 ORTHO05D009403 1.2e-08 62.4 49 61.2
CSS0020554 Camellia sinensis var. sinensis HOM05D007756 ORTHO05D009403 1.5e-08 62.0 43 67.4
CSS0041901 Camellia sinensis var. sinensis HOM05D007756 ORTHO05D009403 1.5e-08 62.0 43 67.4
Manes.17G040600 Manihot esculenta HOM05D007756 ORTHO05D009403 3.4e-08 60.8 48 66.7
Ciclev10017421m.g Citrus clementina HOM05D007756 ORTHO05D009403 4.4e-08 60.5 52 59.6
Hma1.2p1_0144F.1_g064980 Hydrangea macrophylla HOM05D007756 ORTHO05D009403 4.4e-08 60.5 50 66.0
Glyma.07G191400 Glycine max HOM05D007756 ORTHO05D009403 5.8e-08 60.1 51 62.7
CiPaw.09G159700 Carya illinoinensis HOM05D007756 ORTHO05D009403 7.6e-08 59.7 49 63.3
Gohir.D05G167100 Gossypium hirsutum HOM05D007756 ORTHO05D009403 7.6e-08 59.7 47 61.7
Thecc.06G196200 Theobroma cacao HOM05D007756 ORTHO05D009403 7.6e-08 59.7 47 61.7
MELO3C007317.2 Cucumis melo HOM05D007756 ORTHO05D009403 1.3e-07 58.9 48 60.4
BcaB03g13271 Brassica carinata HOM05D015938 ORTHO05D009403 2.2e-07 58.2 46 65.2
BcaB03g13272 Brassica carinata HOM05D015938 ORTHO05D009403 2.2e-07 58.2 46 65.2
Glyma.08G057900 Glycine max HOM05D007756 ORTHO05D009403 2.9e-07 57.8 51 60.8
Prupe.4G039100 Prunus persica HOM05D007756 ORTHO05D009403 2.9e-07 57.8 47 66.0
Gohir.A06G123802 Gossypium hirsutum HOM05D007756 ORTHO05D009403 3.8e-07 57.4 47 57.4
Gohir.D06G128600 Gossypium hirsutum HOM05D007756 ORTHO05D009403 3.8e-07 57.4 47 57.4
CiPaw.10G120600 Carya illinoinensis HOM05D007756 ORTHO05D009403 6.4e-07 56.6 51 62.7
VMungo0251G2707 Vigna mungo HOM05D007756 ORTHO05D009403 6.4e-07 56.6 51 64.7
Manes.16G022400 Manihot esculenta HOM05D007756 ORTHO05D009403 8.4e-07 56.2 47 63.8
Cpa.g.sc27.103 Carica papaya HOM05D007756 ORTHO05D009403 1.1e-06 55.8 43 60.5
TAR679G0001 Trochodendron aralioides HOM05D007756 ORTHO05D009403 1.1e-06 55.8 48 62.5
Ca_18499_v3 Cicer arietinum L. HOM05D007756 ORTHO05D009403 1.4e-06 55.5 51 56.9
Sed0004694 Sechium edule HOM05D007756 ORTHO05D009403 1.4e-06 55.5 48 58.3
Aqoxy1G02679 Aquilegia oxysepala HOM05D007756 ORTHO05D009403 1.9e-06 55.1 55 58.2
BcaC07g38642 Brassica carinata HOM05D015938 ORTHO05D009403 1.9e-06 55.1 46 60.9
BolC8t49053H Brassica oleracea HOM05D015938 ORTHO05D009403 1.9e-06 55.1 46 60.9
BraA08t35278Z Brassica rapa HOM05D015938 ORTHO05D009403 1.9e-06 55.1 46 60.9
Phvul.002G223500 Phaseolus vulgaris HOM05D007756 ORTHO05D009403 2.4e-06 54.7 50 56.0
GSVIVG01005837001 Vitis vinifera HOM05D007756 ORTHO05D009403 2.4e-06 54.7 49 55.1
Cfa000372 Carpinus fangiana HOM05D007756 ORTHO05D009403 3.2e-06 54.3 50 62.0
RcHm_v2.0_Chr5g0006781 Rosa chinensis HOM05D007756 ORTHO05D009403 3.2e-06 54.3 50 60.0
Potri.004G036350 Populus trichocarpa HOM05D007756 ORTHO05D009403 4.2e-06 53.9 47 57.4
CiPaw.10G120500 Carya illinoinensis HOM05D007756 ORTHO05D009403 5.4e-06 53.5 43 65.1
FAN16G3405 Fragaria x ananassa HOM05D007756 ORTHO05D009403 5.4e-06 53.5 46 56.5
Lsat_1_v5_gn_1_124981 Lactuca sativa HOM05D007756 ORTHO05D009403 5.4e-06 53.5 50 56.0
Lalb_Chr09g0327421 Lupinus albus HOM05D007756 ORTHO05D009403 5.4e-06 53.5 50 56.0
RcHm_v2.0_Chr5g0006791 Rosa chinensis HOM05D007756 ORTHO05D009403 5.4e-06 53.5 43 55.8
CARHR011410 Cardamine hirsuta HOM05D015938 ORTHO05D009403 7.1e-06 53.1 49 57.1
FAN11G3808 Fragaria x ananassa HOM05D007756 ORTHO05D009403 7.1e-06 53.1 46 56.5
Gohir.D06G128650 Gossypium hirsutum HOM05D007756 ORTHO05D009403 7.1e-06 53.1 47 55.3
Prupe.4G039200 Prunus persica HOM05D007756 ORTHO05D009403 7.1e-06 53.1 45 57.8
FvH4_3g04381 Fragaria vesca HOM05D007756 ORTHO05D009403 9.3e-06 52.8 46 56.5
Nn1g06699 Nelumbo nucifera HOM05D007756 ORTHO05D009403 9.3e-06 52.8 52 55.8
Potri.004G036375 Populus trichocarpa HOM05D007756 ORTHO05D009403 9.3e-06 52.8 43 62.8


User provided reference genes

Program Settings