Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 4.2e-264 914.1 443 100.0
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 1.5e-253 879.0 443 96.6
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 9.8e-253 876.3 443 96.4
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.2e-219 764.6 474 82.3
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 4.3e-208 728.0 427 83.8
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 6.5e-180 634.4 407 74.2
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 1.1e-179 633.6 442 70.1
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.1e-179 633.6 401 73.1
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 2.5e-179 632.5 401 73.3
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 2.7e-178 629.0 401 72.8
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 7.9e-178 627.5 434 69.4
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 2.3e-177 625.9 380 76.6
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 9.7e-176 620.5 394 73.9
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 9.7e-176 620.5 432 68.5
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 2.8e-175 619.0 409 72.4
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.8e-175 619.0 411 71.8
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 6.3e-175 617.8 420 71.2
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 6.3e-175 617.8 461 67.2
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 1.8e-174 616.3 393 73.0
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 4.1e-174 615.1 397 72.5
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 6.9e-174 614.4 421 70.5
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 1.2e-173 613.6 393 74.6
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 3.4e-173 612.1 390 73.3
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 7.7e-173 610.9 417 69.3
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 7.7e-173 610.9 418 70.3
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 7.7e-173 610.9 430 68.6
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.3e-172 610.1 426 69.7
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 1.3e-172 610.1 411 70.3
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 5.0e-172 608.2 413 69.2
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 1.4e-171 606.7 394 71.8
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 2.5e-171 605.9 397 71.0
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 5.5e-171 604.7 407 72.2
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 7.2e-171 604.4 415 69.4
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 1.6e-170 603.2 437 67.3
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.6e-170 603.2 414 70.8
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 3.6e-170 602.1 402 70.6
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 3.6e-170 602.1 401 72.1
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 4.7e-170 601.7 416 68.0
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 7.9e-170 600.9 410 68.8
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 7.9e-170 600.9 416 69.0
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.9e-170 600.9 410 71.0
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.4e-169 600.1 422 68.7
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 2.3e-169 599.4 418 67.7
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 3.0e-169 599.0 413 68.0
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 3.9e-169 598.6 414 70.0
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 6.7e-169 597.8 398 70.1
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 8.8e-169 597.4 422 68.5
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 9.7e-168 594.0 391 71.9
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 1.3e-167 593.6 405 70.6
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 8.2e-167 590.9 346 84.1
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 1.1e-166 590.5 392 71.4
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.8e-166 589.7 371 73.9
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.8e-166 589.7 390 70.5
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 7.0e-166 587.8 356 78.9
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 3.5e-165 585.5 408 68.1
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.3e-164 583.6 405 69.1
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 1.3e-164 583.6 364 74.5
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 8.5e-164 580.9 408 68.9
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.1e-163 580.5 394 68.8
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 2.5e-163 579.3 398 67.6
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 4.2e-163 578.6 399 67.9
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 4.2e-163 578.6 403 67.2
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 7.2e-163 577.8 387 69.3
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 2.7e-162 575.9 397 68.5
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 3.6e-162 575.5 383 69.2
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 3.6e-162 575.5 405 69.4
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 8.0e-162 574.3 396 67.4
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 1.4e-161 573.5 397 67.3
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 5.2e-161 571.6 405 66.2
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 1.1e-160 570.5 437 64.8
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 1.5e-160 570.1 407 65.6
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 2.6e-160 569.3 401 67.3
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.4e-160 568.5 437 65.7
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 5.7e-160 568.2 388 68.6
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 5.7e-160 568.2 388 68.6
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 5.7e-160 568.2 443 63.7
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 2.8e-159 565.8 404 66.1
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 2.8e-159 565.8 394 69.0
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.8e-158 563.1 401 65.8
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 1.8e-158 563.1 405 65.7
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 6.5e-156 554.7 356 73.9
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.5e-155 553.5 367 71.7
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.3e-153 546.2 431 64.0
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.1e-150 537.3 432 62.5
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.4e-150 537.0 416 63.5
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 2.0e-149 533.1 379 66.2
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 2.1e-146 523.1 412 61.7
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.9e-139 500.0 367 67.6
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 7.2e-139 498.0 376 63.6
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.1e-134 484.2 383 59.8
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 1.4e-134 483.8 367 63.8
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 4.1e-134 482.3 388 59.3
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 1.2e-130 470.7 405 56.5
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 3.7e-127 459.1 393 59.3
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 4.9e-127 458.8 322 68.0
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 8.3e-127 458.0 366 61.7
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 2.5e-123 446.4 414 57.7
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 2.8e-122 443.0 287 74.2
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 1.5e-120 437.2 364 56.3
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 1.6e-117 427.2 301 69.8
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 5.8e-112 408.7 394 51.3
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 2.7e-109 399.8 367 54.2
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 5.6e-91 339.0 245 67.3
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 1.9e-86 323.9 278 56.8
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 2.4e-86 323.6 240 65.0
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 2.1e-82 310.5 179 81.0
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 4.9e-79 299.3 415 41.0
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.1e-77 293.9 301 51.8
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.3e-76 290.4 167 80.2
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.3e-76 290.4 167 80.2
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 1.6e-74 284.3 437 41.6
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 4.8e-74 282.7 390 41.3
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.6e-66 257.7 173 71.7
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 7.9e-53 212.2 127 80.3
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 2.3e-52 210.7 215 54.4
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 9.7e-51 205.3 139 69.1
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.8e-47 193.4 138 72.5
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 1.1e-43 181.8 379 33.0
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.6e-43 180.6 99 82.8
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 4.4e-43 179.9 123 65.0
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.2e-38 162.5 111 70.3
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 3.4e-35 153.7 100 69.0
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 9.8e-35 152.1 89 77.5
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 7.2e-30 136.0 103 60.2
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 6.8e-28 129.4 81 66.7
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.6e-19 100.9 160 40.0
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 3.9e-15 87.0 113 40.7
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 3.9e-15 87.0 211 33.2
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 6.4e-10 69.7 235 25.5
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 9.2e-09 65.9 268 24.6
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 1.2e-08 65.5 215 26.5
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 2.0e-08 64.7 238 26.1
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 2.0e-08 64.7 237 24.9
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 4.6e-08 63.5 238 25.6
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 1.3e-07 62.0 238 25.6
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 1.3e-07 62.0 266 24.1
PSO170G3708 Papaver somniferum HOM05D002999 ORTHO05D003137 1.7e-07 61.6 247 22.7
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 3.0e-07 60.8 66 50.0
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 3.9e-07 60.5 254 24.0
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 5.0e-07 60.1 249 26.1
Haze_27091 Corylus avellana HOM05D002999 ORTHO05D003137 6.6e-07 59.7 249 25.7
ECA247G2129 Erigeron canadensis HOM05D002999 ORTHO05D003137 6.6e-07 59.7 238 25.2
Hma1.2p1_0643F.1_g194600 Hydrangea macrophylla HOM05D002999 ORTHO05D003137 6.6e-07 59.7 238 24.8
Nitab4.5_0000295g0130 Nicotiana tabacum HOM05D002999 ORTHO05D003137 6.6e-07 59.7 268 23.9
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 6.6e-07 59.7 298 22.8
PSO302G0054 Papaver somniferum HOM05D002999 ORTHO05D003137 8.6e-07 59.3 238 23.1
QL12p023156 Quercus lobata HOM05D002999 ORTHO05D003137 8.6e-07 59.3 280 23.2
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.5e-06 58.5 229 24.5
Nn4g26096 Nelumbo nucifera HOM05D002999 ORTHO05D003137 1.5e-06 58.5 238 26.1
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 1.5e-06 58.5 150 28.7
Sed0001614 Sechium edule HOM05D002999 ORTHO05D003137 1.9e-06 58.2 238 25.2
Manes.05G070800 Manihot esculenta HOM05D002999 ORTHO05D003137 2.5e-06 57.8 275 22.5
unitig_749.g14054 Utricularia gibba HOM05D002999 ORTHO05D003137 2.5e-06 57.8 150 30.0
AagrBONN_evm.TU.Sc2ySwM_362.297 Anthoceros agrestis HOM05D002999 ORTHO05D003137 3.3e-06 57.4 251 24.3
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 5.6e-06 56.6 278 22.3
Hund05388 Selenicereus undatus HOM05D002999 ORTHO05D003137 5.6e-06 56.6 145 29.0
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 7.3e-06 56.2 184 29.9
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 7.3e-06 56.2 278 22.3
AUR62034587 Chenopodium quinoa HOM05D002999 ORTHO05D003137 7.3e-06 56.2 237 24.1
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 7.3e-06 56.2 204 24.5
SalBow2G2809 Salvia bowleyana HOM05D002999 ORTHO05D003137 9.5e-06 55.8 150 29.3
Sopen06g003630 Solanum pennellii HOM05D002999 ORTHO05D003137 9.5e-06 55.8 238 25.2


User provided reference genes

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