Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 2.2e-116 422.5 253 100.0
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 7.1e-107 391.0 254 92.1
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 1.8e-105 386.3 254 87.0
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 6.5e-76 288.1 265 64.2
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 9.4e-75 284.3 262 64.1
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 5.5e-51 205.3 259 54.8
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 5.2e-33 145.6 243 48.6
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.0e-32 143.7 235 48.1
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.0e-32 143.7 235 48.1
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 3.4e-32 142.9 239 44.8
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 3.4e-32 142.9 239 44.8
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 4.4e-32 142.5 253 43.9
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 5.8e-32 142.1 247 45.3
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 3.2e-30 136.3 258 42.2
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 3.5e-29 132.9 287 40.8
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 6.8e-25 118.6 150 53.3
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.2e-24 117.9 291 38.5
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 2.0e-24 117.1 247 43.3
SGA_v2.0_scaffold100G29660 Striga asiatica HOM05D004441 ORTHO05D003109 4.4e-24 115.9 261 38.3
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 9.9e-24 114.8 247 39.7
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 2.2e-23 113.6 268 39.9
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 1.1e-22 111.3 264 40.2
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.9e-22 110.5 263 39.2
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 5.4e-22 109.0 178 46.6
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 5.4e-22 109.0 178 46.6
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 5.4e-22 109.0 249 39.8
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 9.2e-22 108.2 267 39.7
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 1.2e-21 107.8 277 40.1
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 1.6e-21 107.5 305 37.0
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.1e-21 107.1 267 39.3
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 2.7e-21 106.7 246 38.6
SGA_v2.0_scaffold22G09746 Striga asiatica HOM05D004441 ORTHO05D003109 2.3e-20 103.6 257 39.7
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 3.0e-20 103.2 280 36.4
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 3.9e-20 102.8 246 41.1
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 6.6e-20 102.1 245 40.4
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 1.1e-19 101.3 248 37.9
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.9e-19 100.5 249 40.6
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 9.5e-19 98.2 294 34.4
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.2e-18 97.8 285 36.1
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 1.2e-18 97.8 321 36.8
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 1.6e-18 97.4 262 37.4
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 1.6e-18 97.4 262 37.4
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 1.6e-18 97.4 262 37.4
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 1.6e-18 97.4 262 37.4
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 2.1e-18 97.1 290 36.6
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 4.7e-18 95.9 242 38.0
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 4.7e-18 95.9 247 41.3
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 8.1e-18 95.1 290 35.9
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 4.0e-17 92.8 262 36.6
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 5.2e-17 92.4 290 35.9
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 6.8e-17 92.0 249 37.3
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 5.8e-16 89.0 260 36.5
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 5.8e-16 89.0 262 37.0
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 7.6e-16 88.6 194 41.2
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.3e-15 87.8 271 36.2
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.2e-15 87.0 265 38.5
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 2.2e-15 87.0 252 37.7
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 4.9e-15 85.9 259 35.5
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 6.4e-15 85.5 263 36.1
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 6.4e-15 85.5 263 36.1
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 6.4e-15 85.5 263 36.1
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.1e-14 84.7 285 34.0
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.4e-14 84.3 298 34.9
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.4e-14 84.3 263 36.1
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.9e-14 84.0 263 36.9
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.4e-14 83.6 284 35.9
Nitab4.5_0008104g0020 Nicotiana tabacum HOM05D021131 ORTHO05D022971 3.2e-14 83.2 104 51.9
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 4.1e-14 82.8 213 42.3
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 4.1e-14 82.8 160 45.0
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 4.1e-14 82.8 280 36.4
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 5.4e-14 82.4 258 34.5
PGSC0003DMG400005055 Solanum tuberosum HOM05D021131 ORTHO05D022971 5.4e-14 82.4 109 51.4
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 1.2e-13 81.3 261 34.5
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 1.2e-13 81.3 261 34.5
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 1.6e-13 80.9 264 34.8
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 3.5e-13 79.7 205 39.5
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 4.6e-13 79.3 203 39.4
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.6e-13 79.3 258 34.9
Nitab4.5_0001833g0010 Nicotiana tabacum HOM05D021131 ORTHO05D022971 4.6e-13 79.3 294 32.3
BcaC06g31839 Brassica carinata HOM05D004441 ORTHO05D003109 6.0e-13 79.0 220 37.3
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 6.0e-13 79.0 259 35.5
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 6.0e-13 79.0 265 39.2
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 1.3e-12 77.8 299 33.1
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.7e-12 77.4 205 36.6
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 3.0e-12 76.6 285 35.4
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 5.1e-12 75.9 284 32.4
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 1.5e-11 74.3 214 35.5
Aa31LG1G3780 Aethionema arabicum HOM05D004441 ORTHO05D003109 1.9e-11 73.9 291 41.2
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 2.5e-11 73.6 238 36.6
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 2.5e-11 73.6 267 34.8
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 2.5e-11 73.6 249 34.5
CARHR011330 Cardamine hirsuta HOM05D004441 ORTHO05D003109 3.3e-11 73.2 180 40.6
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 4.3e-11 72.8 275 34.2
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 4.3e-11 72.8 177 39.0
Sopen03g002610 Solanum pennellii HOM05D021131 ORTHO05D022971 4.3e-11 72.8 311 31.2
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 4.3e-11 72.8 197 40.6
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 5.6e-11 72.4 264 32.6
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 5.6e-11 72.4 265 39.2
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 5.6e-11 72.4 296 31.1
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 5.6e-11 72.4 289 33.2
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 7.3e-11 72.0 291 34.0
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 7.3e-11 72.0 259 33.2
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.3e-11 72.0 257 33.1
Solyc03g006600.1 Solanum lycopersicum HOM05D021131 ORTHO05D022971 9.6e-11 71.6 311 30.5
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 1.6e-10 70.9 324 30.9
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 2.8e-10 70.1 286 35.0
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.6e-10 69.7 270 34.8
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 4.7e-10 69.3 242 33.9
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 6.2e-10 68.9 235 33.2
Migut.H01500 Erythranthe guttata HOM05D004441 ORTHO05D003109 6.2e-10 68.9 163 38.0
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 6.2e-10 68.9 237 35.0
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 6.2e-10 68.9 210 39.5
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 8.1e-10 68.6 287 32.4
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 8.1e-10 68.6 283 33.2
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 8.1e-10 68.6 275 38.5
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.4e-09 67.8 259 36.3
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 1.4e-09 67.8 200 36.5
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 1.4e-09 67.8 175 37.7
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 3.1e-09 66.6 202 38.6
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 3.1e-09 66.6 200 36.0
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 4.0e-09 66.2 187 36.9
Thhalv10008484m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 4.0e-09 66.2 193 38.9
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 5.2e-09 65.9 193 38.3
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 5.2e-09 65.9 305 31.1
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 5.2e-09 65.9 234 32.1
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 6.9e-09 65.5 279 31.2
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 2.0e-08 63.9 292 34.6
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 3.4e-08 63.2 254 32.7
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 3.4e-08 63.2 254 32.7
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 3.4e-08 63.2 274 32.1
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 4.4e-08 62.8 190 35.8
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 7.6e-08 62.0 266 33.5
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 9.9e-08 61.6 253 35.6
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 9.9e-08 61.6 192 35.4
Peaxi162Scf00137g00062 Petunia axillaris HOM05D021131 ORTHO05D022971 1.3e-07 61.2 194 37.1
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 1.7e-07 60.8 280 31.4
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.7e-07 60.8 270 32.6
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 2.2e-07 60.5 307 31.3
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 2.9e-07 60.1 292 30.5
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 3.8e-07 59.7 252 36.5
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 6.4e-07 58.9 257 32.3
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 6.4e-07 58.9 275 32.4
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 6.4e-07 58.9 301 30.2
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 1.1e-06 58.2 245 34.7
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 1.4e-06 57.8 246 33.3
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 1.4e-06 57.8 259 32.4
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 1.4e-06 57.8 257 30.7
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 4.2e-06 56.2 192 34.4
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 7.1e-06 55.5 260 32.3
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 9.3e-06 55.1 285 33.0


User provided reference genes

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