Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 1.2e-118 429.9 216 100.0
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 1.8e-111 406.0 216 95.8
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 9.1e-111 403.7 216 95.4
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.1e-95 353.6 214 82.7
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.8e-82 309.7 199 77.9
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.1e-79 300.4 199 76.4
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 2.0e-78 296.2 213 70.0
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 7.7e-78 294.3 202 71.8
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 1.0e-77 293.9 209 69.9
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 3.8e-77 292.0 208 70.7
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 6.6e-77 291.2 218 67.9
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 2.5e-76 289.3 197 72.6
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 4.3e-76 288.5 191 72.3
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 4.3e-76 288.5 210 68.1
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 4.3e-76 288.5 193 73.1
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 5.6e-76 288.1 192 72.9
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 9.5e-76 287.3 191 72.3
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 1.2e-75 287.0 214 67.8
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 1.6e-75 286.6 191 73.8
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 4.7e-75 285.0 214 67.3
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 4.7e-75 285.0 214 67.3
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 8.0e-75 284.3 207 68.1
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 8.0e-75 284.3 217 65.0
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.4e-74 283.5 206 68.0
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 1.8e-74 283.1 210 67.1
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 5.2e-74 281.6 214 66.4
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 8.9e-74 280.8 201 69.2
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.5e-73 280.0 194 70.6
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 2.0e-73 279.6 208 65.9
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 3.4e-73 278.9 188 72.9
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 3.4e-73 278.9 189 73.0
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 4.4e-73 278.5 188 73.4
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 9.8e-73 277.3 181 72.9
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 9.8e-73 277.3 186 74.2
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 1.7e-72 276.6 177 76.3
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 2.2e-72 276.2 207 65.2
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 2.9e-72 275.8 217 64.1
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 2.9e-72 275.8 186 74.2
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 3.7e-72 275.4 191 70.7
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 3.7e-72 275.4 208 65.9
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.9e-72 275.0 191 70.7
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 6.4e-72 274.6 219 65.3
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.1e-71 273.9 205 66.8
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.1e-71 273.9 191 70.2
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 1.1e-71 273.9 210 65.7
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 1.8e-71 273.1 220 61.8
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 3.2e-71 272.3 220 62.3
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 4.1e-71 271.9 237 60.8
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 5.4e-71 271.6 217 63.1
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 7.0e-71 271.2 221 62.0
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 9.2e-71 270.8 196 67.3
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 1.2e-70 270.4 203 65.5
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 1.2e-70 270.4 192 68.2
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.7e-70 269.2 205 65.4
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 3.5e-70 268.9 211 67.3
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 3.5e-70 268.9 190 68.4
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 3.5e-70 268.9 201 65.7
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 4.6e-70 268.5 191 69.6
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 5.9e-70 268.1 195 66.2
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 5.9e-70 268.1 206 68.0
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 7.8e-70 267.7 192 67.7
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 3.9e-69 265.4 185 71.4
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 5.0e-69 265.0 205 65.9
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 6.6e-69 264.6 206 66.5
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 6.6e-69 264.6 204 64.2
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.5e-68 263.5 191 67.5
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.5e-68 263.5 213 64.3
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 2.5e-68 262.7 214 62.1
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 5.6e-68 261.5 209 63.2
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 5.6e-68 261.5 193 66.8
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 1.2e-67 260.4 175 72.6
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 2.1e-67 259.6 200 64.5
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.6e-67 258.8 209 64.6
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 8.0e-67 257.7 194 64.9
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.0e-66 257.3 188 66.5
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 2.3e-66 256.1 186 66.7
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 2.3e-66 256.1 177 70.6
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 6.8e-66 254.6 204 63.7
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 8.9e-66 254.2 199 63.8
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 1.2e-65 253.8 201 63.2
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 4.4e-65 251.9 187 66.3
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 5.8e-65 251.5 208 61.5
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 5.8e-65 251.5 195 60.0
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 1.3e-64 250.4 209 61.2
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 4.9e-64 248.4 215 60.0
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 8.3e-64 247.7 208 61.1
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.1e-63 247.3 207 61.8
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 7.0e-63 244.6 191 64.9
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 6.6e-61 238.0 297 47.5
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 8.6e-61 237.7 200 62.0
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 1.1e-60 237.3 200 59.0
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.1e-60 237.3 166 70.5
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 2.5e-60 236.1 281 49.1
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 6.2e-59 231.5 188 63.8
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 1.4e-58 230.3 189 62.4
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 2.2e-56 223.0 189 61.4
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 6.4e-56 221.5 143 72.0
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 2.5e-52 209.5 189 55.6
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 3.6e-51 205.7 189 56.1
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.1e-50 204.1 218 51.8
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.4e-50 203.8 149 67.8
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 3.8e-48 195.7 172 57.6
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 6.0e-46 188.3 151 61.6
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.8e-46 188.0 148 62.2
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.5e-41 173.7 99 85.9
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.8e-34 150.2 98 71.4
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 4.2e-31 139.0 184 44.6
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 5.4e-31 138.7 184 43.5
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 2.7e-30 136.3 142 49.3
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 2.3e-29 133.3 180 42.8
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 4.3e-28 129.0 80 73.8
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 6.2e-27 125.2 79 74.7
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.4e-26 123.2 78 74.4
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.2e-25 120.9 79 72.2
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.5e-25 120.6 134 50.7
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 4.6e-22 109.0 101 58.4
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 9.6e-20 101.3 218 34.4
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 1.7e-16 90.5 57 68.4
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 4.9e-16 89.0 57 66.7
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.2e-15 85.9 54 75.9
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 1.2e-14 84.3 77 54.5
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.2e-09 67.8 39 76.9
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 1.5e-09 67.4 40 77.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 1.3e-08 64.3 40 72.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.3e-08 64.3 39 76.9
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 2.5e-07 60.1 35 80.0
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 1.2e-06 57.8 91 41.8
Pp3c18_1310 Physcomitrium patens HOM05D029718 ORTHO05D026695 7.9e-06 55.1 119 31.9


User provided reference genes

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