Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 4.7e-137 491.1 236 100.0
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 1.2e-132 476.5 236 95.8
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 2.1e-132 475.7 236 96.2
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 1.6e-113 412.9 227 85.9
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 4.2e-109 398.3 249 77.9
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 8.1e-105 384.0 205 88.8
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 3.4e-103 378.6 241 78.0
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 3.2e-85 318.9 235 66.8
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 9.3e-85 317.4 237 65.8
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 3.9e-83 312.0 238 62.6
Oeu021580.1 Olea europaea HOM05D005683 ORTHO05D006958 1.5e-82 310.1 222 66.2
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 2.5e-82 309.3 220 66.8
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 5.7e-82 308.1 229 66.4
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 5.7e-82 308.1 229 66.4
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 1.2e-79 300.4 227 64.8
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 2.0e-79 299.7 216 66.2
Lsat_1_v5_gn_7_20320 Lactuca sativa HOM05D005683 ORTHO05D006958 1.9e-77 293.1 224 62.9
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 2.5e-77 292.7 224 59.4
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 1.2e-76 290.4 215 66.0
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 1.2e-76 290.4 225 61.8
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 1.2e-76 290.4 228 63.6
COL.COLO4_31635 Corchorus olitorius HOM05D005683 ORTHO05D006958 2.7e-76 289.3 230 60.9
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 6.1e-76 288.1 229 61.1
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 1.4e-75 287.0 237 63.3
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 1.8e-75 286.6 217 64.1
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 1.8e-75 286.6 228 61.8
vmacro15855 Vaccinium macrocarpon HOM05D005683 ORTHO05D006958 1.8e-75 286.6 310 49.4
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 2.3e-75 286.2 232 62.5
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 2.3e-75 286.2 233 60.1
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 8.8e-75 284.3 224 62.5
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 8.8e-75 284.3 226 60.6
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 1.1e-74 283.9 227 59.5
Lj2A278T71 Lonicera japonica HOM05D005683 ORTHO05D006958 2.5e-74 282.7 216 63.4
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 2.5e-74 282.7 231 63.2
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 2.5e-74 282.7 226 63.3
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 4.3e-74 282.0 234 57.7
FAN21G2210 Fragaria x ananassa HOM05D005683 ORTHO05D006958 7.4e-74 281.2 237 60.3
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 7.4e-74 281.2 225 60.0
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 7.4e-74 281.2 223 61.9
ClCG01G022390 Citrullus lanatus HOM05D005683 ORTHO05D006958 9.7e-74 280.8 221 63.3
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 9.7e-74 280.8 231 58.9
FvH4_3g03670 Fragaria vesca HOM05D005683 ORTHO05D006958 1.7e-73 280.0 230 61.3
FAN11G3671 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.7e-73 280.0 230 61.3
FAN16G0586 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.7e-73 280.0 230 61.3
PGR042G1297 Punica granatum HOM05D005683 ORTHO05D006958 1.7e-73 280.0 233 57.9
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 2.8e-73 279.3 233 57.1
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 3.7e-73 278.9 228 61.8
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 3.7e-73 278.9 223 59.2
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 4.8e-73 278.5 212 60.8
MELO3C007336.2 Cucumis melo HOM05D005683 ORTHO05D006958 6.3e-73 278.1 232 61.2
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 6.3e-73 278.1 221 61.1
RcHm_v2.0_Chr5g0005711 Rosa chinensis HOM05D005683 ORTHO05D006958 8.2e-73 277.7 230 61.3
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 1.1e-72 277.3 236 56.8
Carub.0001s1101 Capsella rubella HOM05D005683 ORTHO05D006958 1.1e-72 277.3 233 59.7
CsaV3_6G049570 Cucumis sativus L. HOM05D005683 ORTHO05D006958 1.8e-72 276.6 215 63.7
Aa31LG1G3330 Aethionema arabicum HOM05D005683 ORTHO05D006958 3.1e-72 275.8 232 59.9
FAN25G1197 Fragaria x ananassa HOM05D005683 ORTHO05D006958 3.1e-72 275.8 237 59.5
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 4.1e-72 275.4 231 58.9
Gohir.A05G166700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 6.9e-72 274.6 229 58.5
Gohir.D05G169700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 6.9e-72 274.6 229 58.5
Gorai.009G174900 Gossypium raimondii HOM05D005683 ORTHO05D006958 6.9e-72 274.6 229 58.5
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 6.9e-72 274.6 230 56.5
AL1G22470 Arabidopsis lyrata HOM05D005683 ORTHO05D006958 1.2e-71 273.9 230 60.0
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 1.2e-71 273.9 225 60.9
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 1.5e-71 273.5 227 59.0
A06p08000 Brassica napus HOM05D005683 ORTHO05D006958 2.0e-71 273.1 230 59.1
BraA06t23999Z Brassica rapa HOM05D005683 ORTHO05D006958 2.0e-71 273.1 230 59.1
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 3.4e-71 272.3 232 59.9
AT1G11380 Arabidopsis thaliana HOM05D005683 ORTHO05D006958 5.9e-71 271.6 236 58.9
Sed0004151 Sechium edule HOM05D005683 ORTHO05D006958 5.9e-71 271.6 227 59.9
Lj1A1216T22 Lonicera japonica HOM05D005683 ORTHO05D006958 1.0e-70 270.8 212 61.3
Gohir.A10G019100 Gossypium hirsutum HOM05D005683 ORTHO05D006958 1.3e-70 270.4 223 60.5
BcaC05g25012 Brassica carinata HOM05D005683 ORTHO05D006958 2.2e-70 269.6 230 58.3
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 2.2e-70 269.6 214 60.3
THA.LOC104818970 Tarenaya hassleriana HOM05D005683 ORTHO05D006958 2.9e-70 269.2 229 57.6
BolC5t29702H Brassica oleracea HOM05D005683 ORTHO05D006958 3.8e-70 268.9 230 58.7
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 3.8e-70 268.9 231 56.3
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 3.8e-70 268.9 220 56.8
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 5.0e-70 268.5 237 55.3
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 6.5e-70 268.1 171 71.9
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 6.5e-70 268.1 227 58.6
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 6.5e-70 268.1 227 57.3
C05p09600 Brassica napus HOM05D005683 ORTHO05D006958 8.5e-70 267.7 230 58.7
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 1.1e-69 267.3 236 57.2
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 1.4e-69 266.9 223 59.2
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 1.9e-69 266.5 236 55.1
Hund21293 Selenicereus undatus HOM05D005683 ORTHO05D006958 1.9e-69 266.5 231 57.1
CARHR011620 Cardamine hirsuta HOM05D005683 ORTHO05D006958 2.5e-69 266.2 232 58.2
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 4.2e-69 265.4 221 57.5
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 7.2e-69 264.6 236 54.2
Gorai.011G021200 Gossypium raimondii HOM05D005683 ORTHO05D006958 9.4e-69 264.2 232 58.2
Sed0027497 Sechium edule HOM05D005683 ORTHO05D006958 9.4e-69 264.2 227 59.9
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 1.2e-68 263.8 230 56.5
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 1.6e-68 263.5 236 54.7
Migut.M01228 Erythranthe guttata HOM05D005683 ORTHO05D006958 6.1e-68 261.5 203 62.6
Gohir.D10G020000 Gossypium hirsutum HOM05D005683 ORTHO05D006958 6.1e-68 261.5 223 58.3
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 1.0e-67 260.8 233 54.9
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 1.4e-67 260.4 239 57.3
Cpa.g.sc27.157 Carica papaya HOM05D005683 ORTHO05D006958 5.1e-67 258.5 218 58.3
Nn1g03823 Nelumbo nucifera HOM05D005683 ORTHO05D006958 1.1e-66 257.3 236 57.6
Thecc.06G202400 Theobroma cacao HOM05D005683 ORTHO05D006958 5.7e-66 255.0 216 56.9
CANSAT56G4448 Cannabis sativa HOM05D005683 ORTHO05D006958 7.4e-66 254.6 232 57.8
Lj4g0024466 Lotus japonicus HOM05D005683 ORTHO05D006958 1.7e-65 253.4 216 56.0
Hund23579 Selenicereus undatus HOM05D005683 ORTHO05D006958 2.4e-64 249.6 233 54.5
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 5.3e-64 248.4 182 60.4
Glyma.07G188900 Glycine max HOM05D005683 ORTHO05D006958 7.7e-63 244.6 230 52.6
unitig_748.g7566 Utricularia gibba HOM05D005683 ORTHO05D006958 1.0e-62 244.2 218 58.7
arahy.Tifrunner.gnm1.ann1.NC80VA Arachis hypogaea HOM05D005683 ORTHO05D006958 8.5e-62 241.1 229 51.5
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 2.5e-61 239.6 234 50.9
MBI02_g46153_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 9.4e-61 237.7 223 54.7
arahy.Tifrunner.gnm1.ann1.B3SD72 Arachis hypogaea HOM05D005683 ORTHO05D006958 3.6e-60 235.7 229 51.5
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 3.1e-56 222.6 206 53.9
EL10Ac8g19981 Beta vulgaris HOM05D005683 ORTHO05D006958 2.7e-52 209.5 228 48.7
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 4.4e-50 202.2 145 60.7
Duzib235G0662 Durio zibethinus HOM05D005683 ORTHO05D006958 5.7e-50 201.8 232 47.8
Duzib192G0920 Durio zibethinus HOM05D005683 ORTHO05D006958 9.8e-50 201.1 215 49.8
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 2.8e-49 199.5 229 47.6
AUR62014686 Chenopodium quinoa HOM05D005683 ORTHO05D006958 4.7e-44 182.2 203 47.3
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 5.4e-40 168.7 141 58.2
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 9.1e-40 167.9 135 54.1
Glyma.08G060400 Glycine max HOM05D005683 ORTHO05D006958 4.5e-39 165.6 150 53.3
CSS0013141 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 2.5e-37 159.8 164 49.4
TAR629G2478 Trochodendron aralioides HOM05D005683 ORTHO05D006958 2.3e-35 153.3 150 50.0
Pp3c21_1800 Physcomitrium patens HOM05D005683 ORTHO05D006958 5.7e-34 148.7 171 40.4
Pp3c18_19760 Physcomitrium patens HOM05D005683 ORTHO05D006958 1.7e-33 147.1 172 39.5
CDE05G0673 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 6.8e-27 125.2 145 44.1
SGA_v2.0_scaffold42G16089 Striga asiatica HOM05D005683 ORTHO05D006958 2.6e-26 123.2 146 49.3
Sp1g10010 Schrenkiella parvula HOM05D005683 ORTHO05D006958 7.5e-26 121.7 214 38.8
Prupe.5G244100 Prunus persica HOM05D005683 ORTHO05D006958 4.7e-20 102.4 79 58.2
CBR_g51429 Chara braunii HOM05D005683 ORTHO05D006958 6.0e-15 85.5 144 36.8
Psat1g209520 Pisum sativum HOM05D005683 ORTHO05D006958 6.0e-15 85.5 81 51.9
Mapoly0084s0076 Marchantia polymorpha HOM05D002715 ORTHO05D002996 2.1e-12 77.0 170 32.9
Duzib106G2069 Durio zibethinus HOM05D002715 ORTHO05D002996 4.4e-10 69.3 155 29.7
Zm00001eb404910 Zea mays HOM05D002715 ORTHO05D002996 1.3e-09 67.8 167 30.5
Lsat_1_v5_gn_2_125901 Lactuca sativa HOM05D002715 ORTHO05D002996 1.7e-09 67.4 154 29.9
CiPaw.09G216800 Carya illinoinensis HOM05D002715 ORTHO05D002996 2.2e-09 67.0 139 31.7
HPP92_022851 Vanilla planifolia HOM05D002715 ORTHO05D002996 2.2e-09 67.0 188 28.7
HPP92_012010 Vanilla planifolia HOM05D002715 ORTHO05D002996 2.9e-09 66.6 144 30.6
arahy.Tifrunner.gnm1.ann1.UC8GIG Arachis hypogaea HOM05D002715 ORTHO05D002996 3.7e-09 66.2 142 28.9
Dinv10563 Davidia involucrata HOM05D002715 ORTHO05D002996 3.7e-09 66.2 147 30.6
HPP92_026130 Vanilla planifolia HOM05D002715 ORTHO05D002996 3.7e-09 66.2 188 28.7
arahy.Tifrunner.gnm1.ann1.8N8WMT Arachis hypogaea HOM05D002715 ORTHO05D002996 4.9e-09 65.9 142 28.9
Medtr3g072040 Medicago truncatula HOM05D002715 ORTHO05D002996 8.4e-09 65.1 145 30.3
Glyma.18G022600 Glycine max HOM05D002715 ORTHO05D002996 1.9e-08 63.9 187 29.4
Zm00001eb194860 Zea mays HOM05D002715 ORTHO05D002996 1.9e-08 63.9 146 30.8
Medtr3g072070 Medicago truncatula HOM05D002715 ORTHO05D002996 2.4e-08 63.5 145 29.7
CBR_g51446 Chara braunii HOM05D005683 ORTHO05D131347 4.1e-08 62.8 158 31.0
AUR62028505 Chenopodium quinoa HOM05D000414 ORTHO05D000276 7.1e-08 62.0 135 30.4
Os01g0825900 Oryza sativa ssp. japonica HOM05D002715 ORTHO05D002996 7.1e-08 62.0 146 33.6
Sed0005582 Sechium edule HOM05D002715 ORTHO05D002996 1.2e-07 61.2 141 29.1
DCAR_007094 Daucus carota HOM05D000198 ORTHO05D000763 1.6e-07 60.8 138 31.9
HPP92_007559 Vanilla planifolia HOM05D002715 ORTHO05D002996 1.6e-07 60.8 233 25.8
AT1G14880 Arabidopsis thaliana HOM05D000414 ORTHO05D000276 2.1e-07 60.5 136 26.5
CBR_g51444 Chara braunii HOM05D005683 ORTHO05D006958 2.1e-07 60.5 115 32.2
Atru.chr12.127 Acer truncatum HOM05D002715 ORTHO05D002996 6.0e-07 58.9 147 26.5
Glyma.05G236233 Glycine max HOM05D000414 ORTHO05D000276 6.0e-07 58.9 132 29.5
GSVIVG01031754001 Vitis vinifera HOM05D000414 ORTHO05D000276 6.0e-07 58.9 149 26.8
Os11g0109700 Oryza sativa ssp. japonica HOM05D002715 ORTHO05D002996 7.8e-07 58.5 139 31.7
AL1G26900 Arabidopsis lyrata HOM05D000414 ORTHO05D000276 1.3e-06 57.8 121 29.8
arahy.Tifrunner.gnm1.ann1.LMSP6K Arachis hypogaea HOM05D000414 ORTHO05D000276 1.7e-06 57.4 138 30.4
SEGI_06743 Sequoiadendron giganteum HOM05D000414 ORTHO05D000276 1.7e-06 57.4 141 30.5
Carub.0001s4117 Capsella rubella HOM05D000414 ORTHO05D000276 2.3e-06 57.0 138 29.0
Lj3g0008971 Lotus japonicus HOM05D000414 ORTHO05D000276 2.3e-06 57.0 131 29.0
Sp2g25370 Schrenkiella parvula HOM05D005683 ORTHO05D006958 3.9e-06 56.2 48 60.4
AL7G44330 Arabidopsis lyrata HOM05D000414 ORTHO05D000276 8.6e-06 55.1 121 27.3
BolC8t52087H Brassica oleracea HOM05D000414 ORTHO05D000276 8.6e-06 55.1 120 29.2
CARHR042340 Cardamine hirsuta HOM05D000414 ORTHO05D000276 8.6e-06 55.1 138 30.4
Psat7g125120 Pisum sativum HOM05D000414 ORTHO05D000276 8.6e-06 55.1 123 28.5


User provided reference genes

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