Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 0.0e+00 1161.4 589 100.0
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 0.0e+00 1147.9 589 98.3
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 0.0e+00 1145.6 589 98.1
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 0.0e+00 1075.8 591 92.7
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 3.6e-287 991.1 594 84.0
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 4.1e-283 977.6 591 82.7
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 2.3e-281 971.8 573 84.5
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 3.9e-281 971.1 590 83.4
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.5e-280 969.1 587 81.6
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.1e-278 963.0 588 83.0
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 1.4e-278 962.6 580 83.1
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 2.4e-278 961.8 588 83.8
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 3.1e-278 961.4 598 81.6
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 6.9e-278 960.3 580 83.8
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 2.6e-277 958.4 580 83.1
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 2.6e-277 958.4 579 82.9
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 4.4e-277 957.6 572 83.4
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 4.4e-277 957.6 589 82.5
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 4.4e-277 957.6 596 81.7
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 5.8e-277 957.2 589 82.5
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 7.6e-277 956.8 586 81.9
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 9.9e-277 956.4 601 81.4
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 9.9e-277 956.4 590 82.2
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 2.9e-276 954.9 589 81.8
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 6.4e-276 953.7 560 84.5
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 6.4e-276 953.7 594 80.3
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 8.4e-276 953.4 562 83.8
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.1e-275 953.0 586 81.4
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.4e-275 952.6 574 82.9
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.9e-275 952.2 560 84.3
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 2.4e-275 951.8 599 80.5
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 2.4e-275 951.8 578 81.5
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 3.2e-275 951.4 547 85.9
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 5.4e-275 950.7 595 81.3
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 9.3e-275 949.9 605 80.2
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 9.3e-275 949.9 590 80.8
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.2e-274 949.5 605 80.8
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.6e-274 949.1 586 81.1
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.6e-274 949.1 589 81.0
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 2.7e-274 948.3 590 80.5
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 2.7e-274 948.3 613 80.9
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 3.5e-274 948.0 589 80.6
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 3.5e-274 948.0 589 81.3
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 4.6e-274 947.6 551 84.6
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 6.0e-274 947.2 615 78.5
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 1.0e-273 946.4 579 81.7
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.0e-273 946.4 591 81.4
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.3e-273 946.0 590 81.4
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 3.9e-273 944.5 589 80.6
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 8.7e-273 943.3 591 81.2
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 1.1e-272 943.0 593 80.8
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 1.5e-272 942.6 575 81.0
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 1.9e-272 942.2 594 80.0
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.9e-272 942.2 591 80.4
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 2.5e-272 941.8 589 80.5
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 3.3e-272 941.4 591 80.2
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 3.3e-272 941.4 591 80.4
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 3.3e-272 941.4 591 80.2
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.6e-271 939.1 589 80.8
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 4.8e-271 937.6 582 81.3
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.4e-270 936.0 585 79.7
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 2.4e-270 935.3 549 84.2
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 5.3e-270 934.1 587 79.6
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 6.9e-270 933.7 585 79.3
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 6.9e-270 933.7 592 79.6
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 6.9e-270 933.7 589 80.3
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 5.8e-269 930.6 589 79.6
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 4.9e-268 927.5 590 80.2
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 5.4e-267 924.1 589 79.5
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 7.1e-267 923.7 588 78.6
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 1.2e-266 922.9 612 77.9
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.1e-266 922.2 598 79.8
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.0e-266 920.6 591 80.0
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 1.0e-265 919.8 591 79.2
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 3.0e-265 918.3 587 79.4
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 5.1e-265 917.5 576 82.8
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.7e-265 917.1 612 77.6
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 2.5e-264 915.2 630 76.5
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 6.2e-263 910.6 570 80.9
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 4.0e-262 907.9 582 78.9
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 5.8e-261 904.0 620 76.0
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 9.9e-261 903.3 583 78.0
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.3e-260 902.9 582 79.4
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 1.1e-259 899.8 607 74.8
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.2e-258 896.3 591 77.3
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 4.3e-256 887.9 595 76.3
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 1.3e-255 886.3 595 77.3
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 7.6e-253 877.1 581 74.9
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.9e-251 872.5 463 93.5
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 9.3e-251 870.2 575 75.3
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.6e-250 869.4 586 76.6
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.9e-249 864.8 589 76.1
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.1e-248 863.2 586 76.1
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 4.3e-248 861.3 554 76.9
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 2.8e-247 858.6 636 71.2
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 3.7e-247 858.2 655 69.8
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 8.2e-247 857.1 574 77.7
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 1.4e-246 856.3 558 78.7
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 6.7e-241 837.4 479 85.8
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 5.7e-240 834.3 522 81.4
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 8.2e-239 830.5 601 73.4
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.9e-236 822.0 549 76.3
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 3.2e-235 818.5 590 70.2
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 8.2e-231 803.9 571 73.4
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 2.5e-227 792.3 546 72.2
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.7e-223 779.6 481 81.7
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 4.8e-223 778.1 532 72.0
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 1.6e-221 773.1 591 66.8
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 9.4e-219 763.8 604 65.1
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 1.2e-216 756.9 523 77.6
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 5.9e-213 744.6 548 70.4
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 3.4e-208 728.8 583 66.6
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 4.8e-207 724.9 405 90.1
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 3.6e-186 655.6 592 57.9
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 5.6e-163 578.6 554 59.0
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 5.6e-163 578.6 410 74.1
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 1.6e-162 577.0 510 58.6
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 5.2e-161 572.0 341 84.8
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 1.9e-158 563.5 356 80.6
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.4e-158 563.1 546 54.2
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 4.9e-135 485.7 565 49.0
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 3.8e-127 459.5 257 88.3
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 2.0e-99 367.5 251 73.7
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 1.8e-92 344.4 188 84.0
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 8.3e-74 282.3 410 44.9
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 6.6e-71 272.7 208 66.8
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 6.4e-58 229.6 198 59.1
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 2.1e-45 188.0 116 80.2
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 6.2e-45 186.4 147 68.0
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 9.0e-44 182.6 153 65.4
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 1.7e-39 168.3 102 80.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.6e-37 160.6 118 61.9
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 8.7e-31 139.4 314 32.5
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 9.0e-28 129.4 312 34.0
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.9e-25 121.7 73 83.6
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 1.0e-18 99.4 57 80.7
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 2.2e-18 98.2 58 81.0
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.5e-14 85.5 111 48.6
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 9.7e-14 82.8 43 83.7
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 8.2e-13 79.7 126 42.1
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 2.4e-12 78.2 107 45.8
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 1.2e-11 75.9 46 69.6
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 1.5e-11 75.5 89 56.2
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 2.9e-10 71.2 42 78.6
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 3.2e-09 67.8 52 73.1
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 7.2e-09 66.6 36 75.0
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 3.3e-06 57.8 37 78.4
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 4.3e-06 57.4 112 37.5
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 5.7e-06 57.0 55 56.4


User provided reference genes

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