Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 0.0e+00 2726.0 1396 100.0
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 0.0e+00 2565.8 1397 95.1
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 0.0e+00 2419.4 1399 90.9
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 0.0e+00 1745.3 1464 70.8
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 0.0e+00 1724.9 1411 71.8
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 0.0e+00 1534.6 1393 65.1
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 3.5e-232 809.7 1492 41.9
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 6.5e-210 735.7 1451 40.7
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.1e-196 691.8 1491 38.0
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 5.0e-178 629.8 1307 40.4
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 6.1e-176 622.9 1479 37.5
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 2.4e-164 584.3 1476 37.4
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 5.4e-164 583.2 1528 37.0
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 1.3e-157 562.0 1516 36.3
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 9.2e-156 555.8 1484 35.6
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 1.6e-155 555.1 1499 36.4
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 7.8e-155 552.7 1537 35.0
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 4.0e-151 540.4 1506 35.0
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 7.6e-150 536.2 1511 34.6
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.4e-148 531.2 1439 35.6
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.2e-148 530.8 1440 35.6
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 3.2e-148 530.8 1403 36.6
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.2e-147 528.9 1224 36.4
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 5.6e-145 520.0 1530 33.8
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 8.1e-144 516.2 1429 36.2
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 7.6e-142 509.6 1543 33.2
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 3.8e-141 507.3 1503 34.3
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 4.2e-140 503.8 1547 32.5
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.2e-139 502.3 1544 32.6
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 3.5e-139 500.7 1532 33.7
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 4.6e-139 500.4 1518 34.2
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 4.3e-137 493.8 1513 32.8
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.3e-136 492.3 1503 33.7
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.8e-135 488.4 1197 36.9
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 9.0e-135 486.1 1375 35.6
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.6e-134 483.0 1513 33.2
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 7.6e-134 483.0 1517 33.3
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 7.6e-134 483.0 1529 33.0
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 1.1e-132 479.2 1257 35.2
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 2.4e-132 478.0 1537 32.8
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 4.2e-132 477.2 1508 33.3
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.2e-132 477.2 1516 33.2
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 5.4e-132 476.9 1492 33.4
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 9.3e-132 476.1 1524 32.6
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.2e-131 475.7 1530 32.6
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.9e-131 473.0 1517 33.0
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.3e-130 471.5 1514 33.0
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 9.6e-129 466.1 1529 32.4
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 6.2e-128 463.4 1459 32.8
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.0e-127 460.7 1537 32.7
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 5.5e-124 450.3 1301 34.1
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.2e-123 449.1 1521 32.2
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 8.7e-122 443.0 776 42.8
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.4e-119 435.6 1238 33.8
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.4e-116 425.6 1238 33.4
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 7.9e-115 419.9 1222 32.9
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.3e-114 419.1 1363 31.5
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.9e-110 403.7 1475 31.1
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.0e-109 402.9 1212 34.6
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.7e-109 402.1 1518 31.3
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 3.2e-108 397.9 1401 32.3
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 7.9e-107 393.3 1207 33.6
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 8.8e-106 389.8 1570 30.6
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 4.5e-102 377.5 1394 31.3
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.5e-101 373.2 1395 31.2
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.9e-100 372.1 1393 31.4
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 3.2e-100 371.3 1414 30.9
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 9.4e-100 369.8 1346 30.8
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.1e-98 364.0 1348 31.5
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 8.8e-98 363.2 1338 30.7
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.4e-95 355.1 1246 32.3
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.9e-92 345.5 1446 30.5
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.2e-91 342.8 1123 32.4
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 2.3e-90 338.6 1278 30.7
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 3.7e-80 304.7 803 35.5
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 6.5e-77 293.9 959 32.7
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 3.4e-73 281.6 588 37.8
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 4.1e-71 274.6 1391 27.5
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 5.9e-70 270.8 1238 30.4
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.0e-69 270.0 1184 29.7
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.0e-69 270.0 990 31.0
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 3.8e-69 268.1 1197 29.4
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 5.7e-65 254.2 1206 30.3
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 4.9e-64 251.1 1348 26.9
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 8.3e-64 250.4 490 40.4
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 7.0e-63 247.3 1185 28.9
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 2.7e-62 245.4 1157 29.2
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 3.5e-62 245.0 1425 26.8
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 1.3e-61 243.0 428 42.8
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 2.3e-61 242.3 1216 29.0
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 6.6e-61 240.7 1291 29.0
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 3.3e-60 238.4 1170 28.9
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.6e-59 236.1 739 33.2
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.6e-59 235.0 1338 26.9
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 4.9e-56 224.6 418 39.5
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 9.2e-55 220.3 1186 28.1
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 6.0e-54 217.6 847 30.6
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.5e-52 213.0 1191 26.8
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 8.9e-50 203.8 1175 26.9
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.4e-49 201.8 1168 27.9
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 7.5e-49 200.7 428 40.2
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 9.8e-49 200.3 585 32.5
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 2.2e-48 199.1 1175 27.3
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 2.2e-48 199.1 930 29.1
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 6.4e-48 197.6 919 28.2
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.1e-47 196.8 1163 28.1
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 1.4e-47 196.4 590 32.4
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 2.4e-47 195.7 1243 26.3
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 3.2e-47 195.3 524 33.6
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 4.1e-47 194.9 507 35.5
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.1e-46 192.6 482 36.1
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 4.6e-46 191.4 804 30.3
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.7e-45 189.5 500 34.6
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 5.1e-45 188.0 599 31.1
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 1.1e-44 186.8 518 34.6
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 2.8e-43 182.2 1174 27.8
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.7e-43 181.4 654 32.0
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 1.4e-42 179.9 1201 26.3
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 1.4e-42 179.9 1201 26.3
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 1.4e-42 179.9 1156 26.0
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 2.3e-42 179.1 1171 26.0
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 8.9e-42 177.2 1186 25.8
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 5.8e-41 174.5 1199 26.2
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 9.2e-39 167.2 570 30.7
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 3.5e-38 165.2 375 36.8
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 7.8e-38 164.1 1219 25.2
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 5.1e-37 161.4 417 36.5
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.5e-36 159.8 1162 24.5
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.9e-36 159.5 975 27.1
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.5e-36 159.1 406 35.2
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.5e-36 159.1 946 27.6
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 3.3e-36 158.7 1162 24.5
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 4.3e-36 158.3 413 35.4
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 5.6e-36 157.9 464 33.4
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 7.3e-36 157.5 463 33.5
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 7.3e-36 157.5 464 33.4
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 3.6e-35 155.2 410 35.6
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 8.1e-35 154.1 412 34.7
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 8.1e-35 154.1 1198 25.6
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 3.1e-34 152.1 410 32.9
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.1e-34 152.1 415 34.7
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 8.9e-34 150.6 350 35.7
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 2.6e-33 149.1 1209 25.1
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 3.4e-33 148.7 434 32.9
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 4.4e-33 148.3 415 34.2
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.4e-33 148.3 1162 25.3
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 7.6e-33 147.5 377 35.5
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-32 146.0 458 30.8
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 2.9e-32 145.6 391 34.5
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 6.4e-32 144.4 392 34.4
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-30 139.4 401 32.4
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.0e-30 137.9 290 35.9
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 7.8e-30 137.5 389 32.9
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 2.5e-28 132.5 1185 23.6
CAN.G838.3 Capsicum annuum HOM05D003788 ORTHO05D043402 2.5e-28 132.5 100 74.0
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 4.3e-28 131.7 1188 23.4
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 1.6e-27 129.8 513 27.9
CAN.G1483.9 Capsicum annuum HOM05D003788 ORTHO05D043402 6.2e-27 127.9 83 80.7
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 1.3e-24 120.2 1219 23.4
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 4.2e-23 115.2 490 28.2
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 2.1e-22 112.8 270 35.9
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 2.1e-22 112.8 270 35.9
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.7e-21 109.8 254 35.8
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 3.6e-19 102.1 499 28.9
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 1.9e-15 89.7 160 42.5
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 7.1e-15 87.8 188 34.6
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.5e-12 80.1 226 33.6
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 2.9e-08 65.9 286 25.2
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 4.9e-08 65.1 77 50.6
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 6.5e-08 64.7 48 62.5
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 1.4e-07 63.5 295 27.5
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 3.2e-07 62.4 322 27.6
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 4.2e-07 62.0 86 41.9
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 9.3e-07 60.8 624 23.1
CDE03G0301 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.6e-06 60.1 130 36.9
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.1e-06 59.7 129 40.3


User provided reference genes

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