Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 3.1e-102 375.2 191 100.0
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 1.0e-97 360.1 191 95.3
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 2.3e-97 359.0 191 95.3
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 6.0e-90 334.3 189 89.4
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.2e-86 321.2 191 84.3
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 4.9e-84 314.7 215 77.2
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 1.1e-80 303.5 192 79.2
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 6.9e-78 294.3 186 78.0
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 4.3e-72 275.0 185 74.6
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 4.0e-70 268.5 195 70.3
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 7.6e-69 264.2 179 72.6
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 8.4e-68 260.8 184 71.2
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 2.4e-67 259.2 190 67.4
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 9.3e-67 257.3 187 66.8
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 1.6e-66 256.5 176 71.6
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 2.7e-66 255.8 176 71.0
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 3.5e-66 255.4 187 67.9
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 7.9e-66 254.2 178 69.1
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 1.8e-65 253.1 191 66.5
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.8e-65 253.1 187 70.6
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 1.1e-64 250.4 183 67.8
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 1.5e-64 250.0 177 68.9
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 1.9e-64 249.6 167 73.1
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 5.6e-64 248.1 184 68.5
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 7.4e-64 247.7 169 71.0
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 2.1e-63 246.1 173 70.5
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 2.1e-63 246.1 167 73.1
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 1.1e-62 243.8 204 62.3
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 2.4e-62 242.7 181 70.7
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 2.4e-62 242.7 184 66.8
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 2.4e-62 242.7 181 67.4
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 3.1e-62 242.3 180 64.4
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 5.3e-62 241.5 180 66.1
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 6.9e-62 241.1 176 69.9
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 9.0e-62 240.7 176 69.9
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.2e-61 240.4 176 69.9
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 3.4e-61 238.8 172 69.2
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 5.8e-61 238.0 200 61.5
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 5.8e-61 238.0 176 71.0
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 7.6e-61 237.7 195 62.1
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 1.7e-60 236.5 185 65.4
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 2.2e-60 236.1 185 64.9
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 2.2e-60 236.1 234 55.1
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 2.9e-60 235.7 189 66.7
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 6.4e-60 234.6 189 60.3
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 6.4e-60 234.6 196 62.8
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 8.4e-60 234.2 192 59.9
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 1.1e-59 233.8 190 61.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.9e-59 233.0 184 64.1
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 3.2e-59 232.3 196 62.2
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 3.2e-59 232.3 181 65.7
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 1.6e-58 229.9 181 66.3
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 2.1e-58 229.6 191 64.4
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 2.1e-58 229.6 196 60.2
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 4.6e-58 228.4 195 61.0
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 4.6e-58 228.4 179 63.7
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 4.6e-58 228.4 183 62.3
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 2.5e-56 222.6 187 61.0
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 2.5e-56 222.6 203 58.6
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 4.3e-56 221.9 191 61.3
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 5.6e-56 221.5 184 63.0
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 5.6e-56 221.5 184 60.3
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 2.8e-55 219.2 155 65.8
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 4.8e-55 218.4 161 67.1
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 6.2e-55 218.0 166 63.3
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.4e-54 216.1 179 60.9
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 2.4e-54 216.1 117 92.3
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 6.9e-54 214.5 166 63.9
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 1.0e-52 210.7 166 62.7
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.7e-52 209.9 180 58.3
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 1.4e-51 206.8 193 56.5
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 1.9e-51 206.5 177 59.9
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 4.2e-51 205.3 193 55.4
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 2.7e-50 202.6 188 55.9
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 3.5e-50 202.2 202 53.0
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 4.6e-50 201.8 179 62.0
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 1.1e-48 197.2 184 55.4
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 2.5e-48 196.1 182 53.3
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 4.3e-48 195.3 179 59.2
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 4.3e-48 195.3 182 57.1
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 5.3e-46 188.3 175 54.9
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 2.0e-45 186.4 167 58.1
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 2.0e-45 186.4 163 58.9
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 4.5e-45 185.3 185 54.1
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 5.9e-45 184.9 167 58.7
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 6.5e-44 181.4 167 58.7
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 1.4e-43 180.3 167 58.1
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 7.2e-43 177.9 167 58.1
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 4.6e-42 175.3 173 53.2
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 7.9e-42 174.5 167 56.3
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 1.8e-41 173.3 186 54.3
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 2.3e-41 172.9 167 56.3
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 3.0e-41 172.6 173 55.5
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 3.9e-41 172.2 191 52.4
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.1e-40 170.6 182 53.3
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 1.5e-40 170.2 194 52.1
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 1.5e-40 170.2 191 52.4
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 1.5e-40 170.2 194 52.1
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 3.3e-40 169.1 191 52.4
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 5.7e-40 168.3 179 52.0
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 7.4e-40 167.9 174 55.2
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 9.7e-40 167.5 167 54.5
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 1.6e-39 166.8 174 54.6
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 3.7e-39 165.6 158 54.4
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 2.2e-36 156.4 167 53.3
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 4.4e-32 142.1 103 69.9
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 9.7e-32 141.0 185 47.0
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 2.8e-31 139.4 124 60.5
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 2.8e-31 139.4 183 41.5
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 1.3e-28 130.6 90 67.8
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 2.0e-21 106.7 171 42.7
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 4.2e-19 99.0 96 56.2
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 1.0e-17 94.4 201 32.8
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 1.2e-16 90.9 191 31.9
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 1.0e-12 77.8 116 37.1
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 2.8e-07 59.7 42 61.9
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 8.3e-07 58.2 170 27.1


User provided reference genes

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