Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021892 Solanum tuberosum HOM05D011975 ORTHO05D001736 2.8e-137 492.3 308 100.0
Solyc01g010280.3 Solanum lycopersicum HOM05D011975 ORTHO05D001736 1.9e-125 453.0 307 79.8
Sopen01g005900 Solanum pennellii HOM05D011975 ORTHO05D001736 4.1e-125 451.8 307 79.8
CAN.G1377.3 Capsicum annuum HOM05D011975 ORTHO05D001736 5.9e-79 298.5 300 60.7
Nitab4.5_0007460g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 1.7e-78 297.0 333 55.0
Peaxi162Scf00026g00163 Petunia axillaris HOM05D011975 ORTHO05D001736 7.0e-64 248.4 332 48.5
Nitab4.5_0001118g0030 Nicotiana tabacum HOM05D011975 ORTHO05D001736 4.5e-63 245.7 315 52.1
Nitab4.5_0003583g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 2.2e-33 147.1 317 36.0
Nitab4.5_0026364g0010 Nicotiana tabacum HOM05D011975 ORTHO05D001736 1.4e-32 144.4 317 35.6
Peaxi162Scf00667g00065 Petunia axillaris HOM05D011975 ORTHO05D001736 1.6e-31 141.0 283 37.5
PGSC0003DMG400017799 Solanum tuberosum HOM05D011975 ORTHO05D001736 1.3e-17 94.7 293 31.1
Solyc04g005410.3 Solanum lycopersicum HOM05D001391 ORTHO05D002605 3.2e-16 90.1 312 30.8
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 1.7e-14 84.3 114 48.2
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 3.0e-14 83.6 70 64.3
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 3.9e-14 83.2 117 43.6
Dinv34065 Davidia involucrata HOM05D003787 ORTHO05D001736 8.6e-14 82.0 302 25.8
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.5e-13 81.3 164 37.8
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 3.3e-13 80.1 97 52.6
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 7.3e-13 79.0 139 44.6
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 1.6e-12 77.8 133 40.6
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.1e-12 77.4 70 58.6
Atru.chr11.1622 Acer truncatum HOM05D003787 ORTHO05D001736 2.8e-12 77.0 138 42.0
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 4.7e-12 76.3 77 55.8
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 4.7e-12 76.3 119 42.9
Sopen04g001390 Solanum pennellii HOM05D011975 ORTHO05D001736 4.7e-12 76.3 293 29.7
Oeu004587.1 Olea europaea HOM05D011975 ORTHO05D001736 1.1e-11 75.1 206 31.1
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.1e-11 75.1 113 45.1
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.4e-11 74.7 90 54.4
Cpa.g.sc1.128 Carica papaya HOM05D003787 ORTHO05D001736 1.8e-11 74.3 99 48.5
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 1.8e-11 74.3 119 44.5
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 2.3e-11 73.9 98 46.9
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 2.3e-11 73.9 139 38.1
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 3.1e-11 73.6 144 40.3
Actinidia13966 Actinidia chinensis HOM05D003787 ORTHO05D001736 6.8e-11 72.4 147 36.7
MSTRG.755 Avicennia marina HOM05D011975 ORTHO05D001736 6.8e-11 72.4 106 46.2
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 8.9e-11 72.0 126 42.9
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 8.9e-11 72.0 125 41.6
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 1.2e-10 71.6 95 50.5
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.2e-10 71.6 178 35.4
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 2.0e-10 70.9 150 38.7
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 2.6e-10 70.5 97 46.4
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 2.6e-10 70.5 106 45.3
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 2.6e-10 70.5 133 41.4
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.6e-10 70.5 171 38.0
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 4.4e-10 69.7 75 52.0
Lalb_Chr04g0255641 Lupinus albus HOM05D014318 ORTHO05D001736 5.8e-10 69.3 125 44.0
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 9.9e-10 68.6 141 41.1
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 9.9e-10 68.6 150 39.3
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 1.7e-09 67.8 105 46.7
SGA_v2.0_scaffold36G14463 Striga asiatica HOM05D003787 ORTHO05D001736 1.7e-09 67.8 146 42.5
Glyma.01G060001 Glycine max HOM05D014318 ORTHO05D001736 2.9e-09 67.0 120 43.3
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 2.9e-09 67.0 54 64.8
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 3.7e-09 66.6 173 37.6
Lalb_Chr10g0098891 Lupinus albus HOM05D014318 ORTHO05D001736 6.4e-09 65.9 202 33.7
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 8.3e-09 65.5 173 38.7
Lalb_Chr17g0341211 Lupinus albus HOM05D014318 ORTHO05D001736 8.3e-09 65.5 171 33.9
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 1.1e-08 65.1 131 38.2
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 1.9e-08 64.3 101 42.6
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 1.9e-08 64.3 150 36.7
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 2.4e-08 63.9 78 50.0
vmacro18147 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 2.4e-08 63.9 86 50.0
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 3.2e-08 63.5 97 44.3
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 4.1e-08 63.2 89 48.3
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 4.1e-08 63.2 135 34.1
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 4.1e-08 63.2 56 60.7
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 5.4e-08 62.8 92 47.8
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 9.2e-08 62.0 96 44.8
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.2e-07 61.6 47 61.7
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.2e-07 61.6 47 61.7
RcHm_v2.0_Chr4g0438271 Rosa chinensis HOM05D003787 ORTHO05D001736 1.6e-07 61.2 78 48.7
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 2.1e-07 60.8 93 45.2
Gohir.A13G082800 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.1e-07 60.8 91 44.0
Gohir.D05G306900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.1e-07 60.8 134 38.1
Gorai.009G326900 Gossypium raimondii HOM05D003787 ORTHO05D001736 2.1e-07 60.8 134 38.1
Sc11g0002500 Simmondsia chinensis HOM05D003787 ORTHO05D001736 2.1e-07 60.8 93 39.8
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 2.7e-07 60.5 85 44.7
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 2.7e-07 60.5 60 60.0
Lj2g0027532 Lotus japonicus HOM05D014318 ORTHO05D001736 2.7e-07 60.5 125 38.4
THA.LOC104800368 Tarenaya hassleriana HOM05D011628 ORTHO05D014769 2.7e-07 60.5 54 61.1
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 3.5e-07 60.1 80 48.8
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 4.6e-07 59.7 65 58.5
Gorai.013G094300 Gossypium raimondii HOM05D003787 ORTHO05D001736 4.6e-07 59.7 91 45.1
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 6.0e-07 59.3 77 48.1
Gohir.D13G082500 Gossypium hirsutum HOM05D003787 ORTHO05D001736 6.0e-07 59.3 91 45.1
VMungo1215G1514 Vigna mungo HOM05D014318 ORTHO05D001736 6.0e-07 59.3 121 38.0
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 7.8e-07 58.9 65 55.4
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 7.8e-07 58.9 52 59.6
Gorai.008G176900 Gossypium raimondii HOM05D039012 ORTHO05D001736 1.0e-06 58.5 125 39.2
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 1.3e-06 58.2 171 32.7
THA.LOC104803131 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 1.3e-06 58.2 62 48.4
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 1.3e-06 58.2 50 60.0
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.7e-06 57.8 80 45.0
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.7e-06 57.8 80 45.0
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.7e-06 57.8 80 45.0
DCAR_030042 Daucus carota HOM05D003787 ORTHO05D001736 1.7e-06 57.8 178 28.1
Peaxi162Scf00451g00113 Petunia axillaris HOM05D003787 ORTHO05D001736 1.7e-06 57.8 74 48.6
Sed0025283 Sechium edule HOM05D003787 ORTHO05D001736 1.7e-06 57.8 123 41.5
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.3e-06 57.4 153 34.0
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 3.0e-06 57.0 107 38.3
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.0e-06 57.0 78 42.3
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 3.0e-06 57.0 47 57.4
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 3.9e-06 56.6 107 38.3
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 3.9e-06 56.6 99 37.4
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 3.9e-06 56.6 50 60.0
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 5.1e-06 56.2 94 37.2
FvH4_4g29990 Fragaria vesca HOM05D003787 ORTHO05D001736 5.1e-06 56.2 78 42.3
Gohir.D12G164300 Gossypium hirsutum HOM05D039012 ORTHO05D001736 5.1e-06 56.2 128 37.5
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 5.1e-06 56.2 65 52.3
Phvul.003G042100 Phaseolus vulgaris HOM05D014318 ORTHO05D001736 5.1e-06 56.2 134 35.1
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 5.1e-06 56.2 107 43.0
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 5.1e-06 56.2 62 50.0
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 5.1e-06 56.2 176 35.2
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 6.6e-06 55.8 82 43.9
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 6.6e-06 55.8 128 36.7
Gohir.A12G161000 Gossypium hirsutum HOM05D039012 ORTHO05D001736 6.6e-06 55.8 139 35.3
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 6.6e-06 55.8 60 55.0
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 6.6e-06 55.8 152 35.5
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 8.6e-06 55.5 51 49.0
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 8.6e-06 55.5 78 41.0
FAN17G0759 Fragaria x ananassa HOM05D003787 ORTHO05D001736 8.6e-06 55.5 57 52.6
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 8.6e-06 55.5 100 41.0
Sc04g0007550 Simmondsia chinensis HOM05D003787 ORTHO05D001736 8.6e-06 55.5 101 38.6


User provided reference genes

Program Settings