Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 0.0e+00 1278.5 717 100.0
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 0.0e+00 1094.7 697 91.4
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 2.3e-307 1058.5 689 88.5
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 9.5e-282 973.4 692 83.4
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.0e-238 830.5 711 69.3
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 2.2e-214 749.6 733 64.5
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 1.7e-206 723.4 682 66.0
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 4.7e-63 246.9 726 33.9
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 8.9e-62 242.7 754 32.0
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.3e-60 238.8 697 34.0
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.9e-59 235.0 752 34.4
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 2.3e-57 228.0 273 55.7
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 4.3e-56 223.8 296 50.7
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 5.6e-56 223.4 275 52.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.6e-55 221.9 730 31.6
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 6.2e-55 219.9 220 59.5
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 2.3e-54 218.0 265 53.2
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.2e-53 215.7 702 32.9
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 2.6e-53 214.5 277 50.2
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.7e-52 211.8 287 50.5
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.7e-52 211.8 287 50.5
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 2.2e-52 211.5 712 32.7
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 4.9e-52 210.3 277 49.8
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.9e-52 210.3 270 47.0
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 6.4e-52 209.9 270 47.0
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 3.2e-51 207.6 272 50.0
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 4.1e-51 207.2 738 32.9
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 4.1e-51 207.2 275 46.9
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.2e-50 205.7 279 45.9
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.6e-50 205.3 766 30.3
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 2.1e-50 204.9 284 48.2
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 4.6e-50 203.8 270 48.5
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 3.9e-49 200.7 283 48.1
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.9e-49 200.7 284 47.2
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 5.1e-49 200.3 727 29.8
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.9e-48 198.4 288 49.7
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.6e-48 196.8 278 49.6
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 2.8e-47 194.5 272 47.4
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.6e-47 194.1 278 49.6
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 4.7e-47 193.7 852 30.3
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.8e-46 191.8 276 47.1
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.8e-46 189.9 283 48.1
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 8.9e-46 189.5 272 47.1
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 8.9e-46 189.5 262 48.5
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 2.0e-45 188.3 692 32.5
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 2.0e-45 188.3 295 46.4
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 3.4e-45 187.6 270 44.8
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 4.4e-45 187.2 283 44.5
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 9.9e-45 186.0 277 46.6
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 9.9e-45 186.0 299 46.8
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.9e-44 184.5 697 30.0
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 6.4e-44 183.3 707 29.3
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 3.2e-43 181.0 723 31.0
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 4.1e-43 180.6 269 47.2
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 3.5e-42 177.6 257 47.1
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.3e-41 175.6 730 30.3
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.7e-41 175.3 654 30.3
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 6.6e-41 173.3 653 30.6
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 8.6e-41 172.9 284 43.0
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.1e-40 172.6 285 44.6
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.1e-40 172.6 262 46.9
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.9e-40 171.8 274 44.9
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.5e-40 171.4 285 44.2
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.2e-39 169.1 274 44.5
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.1e-39 168.3 274 44.9
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 2.8e-39 167.9 258 44.6
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.1e-38 166.0 711 29.0
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 6.8e-38 163.3 258 46.1
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 8.9e-38 162.9 250 46.0
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.2e-37 162.5 711 28.7
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.5e-37 162.2 241 43.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 9.9e-37 159.5 246 45.1
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.2e-36 158.3 267 45.3
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 2.2e-36 158.3 248 44.0
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 3.5e-34 151.0 241 44.0
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 1.7e-33 148.7 759 28.6
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 3.0e-33 147.9 266 42.1
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 5.1e-33 147.1 170 54.7
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 4.3e-32 144.1 246 43.1
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 9.6e-32 142.9 254 43.3
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 8.1e-31 139.8 282 38.7
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.1e-30 137.9 255 41.2
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 5.8e-29 133.7 272 37.9
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 2.2e-28 131.7 223 42.6
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 2.2e-28 131.7 249 42.2
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.9e-28 130.6 722 27.1
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 4.9e-28 130.6 144 54.2
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 8.4e-28 129.8 259 38.6
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 4.6e-26 124.0 263 37.6
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 1.0e-25 122.9 223 41.3
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.7e-25 122.1 219 41.6
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.3e-25 121.7 270 38.5
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.1e-23 115.2 259 39.4
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 3.1e-22 111.3 770 26.6
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 2.9e-20 104.8 127 51.2
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.4e-19 102.4 224 41.1
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.9e-19 102.1 251 37.8
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 6.7e-17 93.6 116 49.1
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 7.4e-16 90.1 154 37.0
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.3e-15 89.4 154 37.0
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 1.3e-15 89.4 150 38.7
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.6e-15 89.0 261 36.4
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 2.8e-15 88.2 135 38.5
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 3.7e-15 87.8 266 34.6
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 1.8e-14 85.5 115 46.1
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.5e-13 82.4 272 34.2
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.0e-12 79.7 120 41.7
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.9e-12 78.2 264 33.3
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 6.5e-12 77.0 161 37.3
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.1e-11 76.3 260 30.0
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.4e-11 75.9 260 30.8
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 4.2e-11 74.3 110 42.7
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 5.5e-11 73.9 281 29.5
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 5.5e-11 73.9 107 40.2
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 9.3e-11 73.2 123 40.7
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.6e-10 72.4 109 42.2
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 1.6e-10 72.4 109 40.4
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.6e-10 72.4 109 42.2
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 2.1e-10 72.0 150 39.3
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 4.6e-10 70.9 114 40.4
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 4.6e-10 70.9 114 40.4
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 1.8e-09 68.9 154 36.4
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 8.7e-09 66.6 250 30.4
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 2.5e-08 65.1 59 61.0
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 4.3e-08 64.3 250 31.2
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 3.7e-07 61.2 283 27.6
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 4.1e-06 57.8 283 27.2


User provided reference genes

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