Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 0.0e+00 1337.4 660 100.0
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 0.0e+00 1260.4 661 95.3
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 0.0e+00 1256.1 661 94.9
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 0.0e+00 1144.0 645 88.1
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 0.0e+00 1107.4 635 86.5
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 9.0e-312 1073.2 657 81.9
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 9.4e-268 926.8 644 70.8
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 7.2e-260 900.6 640 69.5
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 1.0e-258 896.7 646 70.0
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 5.5e-252 874.4 640 66.6
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 5.5e-252 874.4 645 67.8
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 6.1e-251 870.9 522 85.2
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.3e-250 869.0 616 69.8
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 1.2e-249 866.7 662 65.6
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 2.7e-246 855.5 640 66.6
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.5e-244 849.7 678 63.9
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.9e-244 849.4 654 63.6
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 1.9e-244 849.4 667 62.5
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 3.3e-244 848.6 667 63.9
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 1.2e-243 846.7 651 64.8
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 2.8e-243 845.5 651 64.7
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 6.1e-243 844.3 651 64.5
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 4.0e-242 841.6 653 63.7
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 1.2e-241 840.1 641 65.5
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 1.5e-241 839.7 638 66.8
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 4.4e-241 838.2 645 65.1
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 4.4e-241 838.2 654 65.0
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 2.9e-240 835.5 642 64.0
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 8.3e-240 833.9 656 64.5
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 8.3e-240 833.9 641 64.4
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 1.3e-237 826.6 654 63.0
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 1.3e-237 826.6 641 63.3
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 1.5e-236 823.2 646 64.4
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 3.3e-236 822.0 647 64.1
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 9.5e-236 820.5 666 62.5
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 1.8e-234 816.2 648 61.1
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.2e-233 813.5 666 62.2
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 2.9e-232 808.9 646 63.3
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 2.9e-232 808.9 658 59.7
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 3.7e-232 808.5 653 61.6
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.4e-231 805.8 680 59.3
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 2.4e-231 805.8 647 63.1
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 3.2e-231 805.4 648 63.9
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 5.4e-231 804.7 661 60.7
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 2.7e-230 802.4 671 61.3
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 7.8e-230 800.8 648 62.7
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 3.9e-229 798.5 676 60.9
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 8.6e-229 797.3 655 62.0
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 2.5e-228 795.8 660 60.8
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.8e-226 789.6 730 54.9
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 3.7e-224 781.9 708 59.0
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 1.1e-223 780.4 661 60.7
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 3.2e-223 778.9 649 60.4
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 1.6e-222 776.5 651 60.5
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 1.6e-222 776.5 673 58.5
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 3.5e-222 775.4 655 60.2
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 5.6e-220 768.1 658 59.4
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 9.5e-220 767.3 653 60.3
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 1.6e-219 766.5 667 58.2
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 4.7e-219 765.0 656 59.6
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 4.0e-218 761.9 660 58.3
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 1.4e-215 753.4 653 59.1
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 7.1e-215 751.1 672 57.3
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 1.6e-214 750.0 654 58.6
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 7.3e-212 741.1 689 57.5
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 4.7e-211 738.4 682 55.4
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.5e-209 733.4 658 56.4
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 5.8e-209 731.5 504 71.8
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 1.9e-207 726.5 668 56.1
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 1.9e-207 726.5 665 55.9
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.2e-206 723.8 671 56.0
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 2.5e-204 716.1 648 57.9
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 4.3e-204 715.3 661 55.4
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 2.1e-203 713.0 651 57.5
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 1.1e-202 710.7 668 56.3
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.4e-202 710.3 655 55.1
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 4.0e-202 708.8 664 55.6
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 5.3e-202 708.4 644 57.0
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 1.5e-201 706.8 661 55.4
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 2.0e-201 706.4 664 55.4
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 9.9e-201 704.1 662 55.3
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 2.2e-200 703.0 662 55.3
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 2.4e-191 672.9 656 54.0
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 9.3e-191 671.0 640 53.9
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 2.3e-189 666.4 672 55.7
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 5.6e-188 661.8 503 66.6
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.4e-186 657.1 452 71.9
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 1.4e-183 647.1 653 53.8
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 5.1e-181 638.6 652 51.2
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 7.6e-177 624.8 644 52.0
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 6.7e-165 585.1 660 47.6
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 7.4e-164 581.6 507 60.9
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 8.5e-160 568.2 622 50.2
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 4.1e-154 549.3 527 57.7
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 6.5e-144 515.4 646 45.4
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 1.9e-127 460.7 402 59.5
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 1.8e-117 427.6 646 38.4
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 6.0e-113 412.5 651 37.0
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 1.6e-94 351.3 397 50.6
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 2.2e-91 340.9 237 70.0
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 9.6e-79 298.9 467 39.4
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.2e-73 282.0 534 34.8
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.0e-64 252.3 544 35.7
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.5e-52 211.8 230 45.7
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 8.5e-51 206.1 177 53.1
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 8.8e-48 196.1 146 61.6
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 7.0e-37 159.8 402 30.8
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.1e-34 152.5 98 74.5
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.6e-33 148.7 228 37.7
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 1.4e-29 135.6 92 65.2
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 4.5e-28 130.6 84 75.0
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 3.4e-23 114.4 113 49.6
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 8.3e-22 109.8 157 41.4
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 2.9e-19 101.3 92 58.7
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.0e-16 92.8 76 63.2
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 1.2e-12 79.3 74 56.8
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 1.7e-11 75.5 76 52.6
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.9e-10 72.0 64 51.6
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 2.1e-09 68.6 91 41.8


User provided reference genes

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