Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 4.0e-123 446.4 712 100.0
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 4.8e-116 422.9 712 97.9
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 5.5e-88 329.7 662 97.7
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 1.4e-59 235.3 717 75.0
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 8.5e-57 226.1 691 69.5
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 5.2e-46 190.3 703 64.3
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 9.8e-45 186.0 174 55.2
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 7.0e-43 179.9 560 85.4
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 9.2e-43 179.5 560 87.7
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 4.6e-42 177.2 193 48.2
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 1.0e-41 176.0 174 52.9
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 1.8e-38 165.2 174 50.0
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 2.0e-37 161.8 174 48.3
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 2.6e-37 161.4 110 84.5
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 9.8e-37 159.5 110 82.7
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 1.7e-36 158.7 110 72.7
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 2.2e-36 158.3 202 44.1
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 2.9e-36 157.9 177 48.0
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 4.9e-36 157.1 115 65.2
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 6.4e-36 156.8 110 80.9
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 8.3e-36 156.4 107 86.9
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 8.3e-36 156.4 174 47.1
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 8.3e-36 156.4 116 63.8
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 1.1e-35 156.0 110 81.8
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 1.4e-35 155.6 182 43.4
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 1.4e-35 155.6 108 87.0
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 2.4e-35 154.8 110 80.9
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 4.1e-35 154.1 169 45.0
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 4.1e-35 154.1 110 81.8
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 5.4e-35 153.7 205 42.4
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 7.0e-35 153.3 173 47.4
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 7.0e-35 153.3 174 46.6
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 7.0e-35 153.3 181 45.3
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 9.2e-35 152.9 109 82.6
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.2e-34 152.5 103 89.3
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 2.0e-34 151.8 183 42.6
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 2.7e-34 151.4 109 81.7
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 2.7e-34 151.4 109 81.7
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 2.7e-34 151.4 107 83.2
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 4.6e-34 150.6 109 80.7
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 4.6e-34 150.6 110 80.9
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 6.0e-34 150.2 109 80.7
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 6.0e-34 150.2 109 79.8
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 6.0e-34 150.2 109 79.8
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 6.0e-34 150.2 109 79.8
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 6.0e-34 150.2 167 44.9
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 6.0e-34 150.2 110 78.2
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 1.3e-33 149.1 110 78.2
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 1.3e-33 149.1 110 78.2
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 1.3e-33 149.1 106 83.0
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 3.0e-33 147.9 108 80.6
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 3.0e-33 147.9 98 89.8
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 8.6e-33 146.4 175 43.4
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 1.1e-32 146.0 168 44.6
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 1.5e-32 145.6 173 43.4
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 1.9e-32 145.2 107 81.3
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 2.5e-32 144.8 116 57.8
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 4.3e-32 144.1 178 43.3
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 4.3e-32 144.1 116 56.9
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 5.6e-32 143.7 173 41.6
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 7.3e-32 143.3 117 61.5
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 7.3e-32 143.3 172 44.2
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 1.6e-31 142.1 172 45.3
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 2.1e-31 141.7 182 39.6
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 2.8e-31 141.4 116 54.3
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 3.1e-30 137.9 102 81.4
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 4.0e-30 137.5 118 55.9
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 4.0e-30 137.5 116 56.9
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 1.2e-29 136.0 117 53.8
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.5e-29 135.6 110 62.7
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 1.5e-29 135.6 117 53.8
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 4.4e-29 134.0 116 52.6
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 1.3e-28 132.5 97 79.4
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 1.7e-28 132.1 176 42.6
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 1.7e-28 132.1 211 35.1
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 2.9e-28 131.3 223 36.8
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 3.7e-28 131.0 95 81.1
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 1.4e-27 129.0 117 53.0
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 2.4e-27 128.3 94 67.0
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 3.2e-27 127.9 168 43.5
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 7.1e-27 126.7 93 78.5
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 1.2e-26 125.9 86 89.5
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 1.6e-26 125.6 92 82.6
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.7e-26 124.8 99 64.6
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 2.7e-26 124.8 216 35.6
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 7.8e-26 123.2 116 50.0
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 3.9e-25 120.9 86 88.4
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 1.9e-24 118.6 86 87.2
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 2.5e-24 118.2 86 87.2
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 4.3e-24 117.5 118 49.2
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 2.1e-23 115.2 86 84.9
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 1.1e-22 112.8 85 81.2
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 1.4e-22 112.5 134 40.3
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 2.9e-20 104.8 84 60.7
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 4.9e-20 104.0 80 81.2
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 1.1e-19 102.8 88 62.5
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 1.9e-19 102.1 101 49.5
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 3.2e-19 101.3 101 48.5
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 5.4e-19 100.5 81 59.3
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 1.2e-18 99.4 88 56.8
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 8.6e-17 93.2 72 66.7
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 3.3e-16 91.3 120 41.7
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 1.4e-14 85.9 84 69.0
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 3.1e-14 84.7 102 38.2
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 2.4e-11 75.1 83 44.6
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 4.2e-11 74.3 87 64.4
arahy.Tifrunner.gnm1.ann1.APG80P Arachis hypogaea HOM05D007208 ORTHO05D009090 2.7e-10 71.6 59 84.7
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 2.7e-10 71.6 60 58.3
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 7.8e-10 70.1 39 74.4


User provided reference genes

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