Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 4.7e-91 337.8 165 100.0
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 1.1e-63 246.9 140 87.9
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 1.6e-62 243.0 147 86.4
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 5.4e-55 218.0 144 79.9
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 5.1e-45 184.9 186 58.6
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 1.4e-42 176.8 187 53.5
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 2.3e-42 176.0 184 55.4
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 4.0e-42 175.3 169 58.0
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 4.0e-42 175.3 169 58.0
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 4.0e-42 175.3 194 55.7
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 2.6e-41 172.6 194 52.6
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 3.4e-41 172.2 199 50.3
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 3.4e-41 172.2 188 55.9
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 2.9e-40 169.1 149 65.8
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.8e-40 168.7 191 52.4
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 6.4e-40 167.9 189 52.9
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.1e-39 167.2 187 52.4
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 1.1e-39 167.2 189 52.4
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 1.1e-39 167.2 168 55.4
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 1.9e-39 166.4 148 62.2
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 1.9e-39 166.4 191 51.8
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 7.1e-39 164.5 182 54.4
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 7.1e-39 164.5 168 54.8
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 9.2e-39 164.1 197 49.7
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 2.7e-38 162.5 192 50.5
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 3.5e-38 162.2 182 53.8
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.9e-37 158.7 164 56.1
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 5.1e-37 158.3 199 49.2
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 5.1e-37 158.3 198 49.0
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 6.6e-37 157.9 202 51.0
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 8.6e-37 157.5 152 56.6
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.9e-36 156.4 145 57.9
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.9e-36 156.4 145 57.9
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 2.8e-35 152.5 157 54.8
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 4.7e-35 151.8 189 49.2
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 8.1e-35 151.0 146 57.5
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.1e-34 150.6 193 51.3
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.4e-34 149.4 190 51.1
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 9.9e-33 144.1 181 48.1
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 1.7e-32 143.3 163 52.8
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 4.9e-32 141.7 189 49.2
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 2.4e-31 139.4 165 48.5
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 3.2e-31 139.0 203 45.8
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 4.2e-31 138.7 182 45.6
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 6.6e-29 131.3 180 45.0
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 2.5e-28 129.4 199 41.2
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 4.3e-28 128.6 169 49.7
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 2.8e-27 125.9 221 40.7
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 3.6e-27 125.6 103 66.0
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 3.6e-27 125.6 173 46.8
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 1.4e-26 123.6 194 42.3
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 5.3e-26 121.7 149 45.0
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 9.9e-25 117.5 158 44.3
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 2.2e-24 116.3 170 42.9
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 1.4e-23 113.6 154 48.1
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 3.0e-21 105.9 133 45.9
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.1e-20 104.0 143 40.6
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 1.3e-19 100.5 164 33.5
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.6e-19 100.1 154 39.0
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 4.8e-19 98.6 171 39.8
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.4e-18 96.3 126 38.9
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 9.0e-18 94.4 126 40.5
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 4.5e-17 92.0 93 53.8
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.3e-16 90.5 128 37.5
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 6.4e-16 88.2 175 34.3
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.4e-15 87.0 136 34.6
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.2e-15 85.9 177 29.9
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 7.1e-15 84.7 149 35.6
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.6e-14 83.6 136 33.8
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.6e-14 83.6 120 38.3
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 3.5e-14 82.4 128 34.4
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 4.6e-14 82.0 181 28.7
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 4.6e-14 82.0 137 38.7
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 1.3e-13 80.5 136 33.8
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 1.3e-13 80.5 155 29.7
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 1.8e-13 80.1 157 30.6
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 1.8e-13 80.1 163 30.7
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 1.8e-13 80.1 126 36.5
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 2.3e-13 79.7 140 33.6
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 2.3e-13 79.7 181 29.8
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 3.0e-13 79.3 164 32.3
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 3.0e-13 79.3 148 33.8
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 3.0e-13 79.3 150 32.0
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 3.0e-13 79.3 149 31.5
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 3.0e-13 79.3 175 30.9
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 3.0e-13 79.3 149 33.6
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 3.9e-13 79.0 153 32.0
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 3.9e-13 79.0 107 47.7
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 6.7e-13 78.2 128 36.7
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.7e-13 78.2 128 36.7
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.7e-13 78.2 128 36.7
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 8.7e-13 77.8 149 30.2
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 8.7e-13 77.8 162 32.1
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.1e-12 77.4 131 36.6
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.1e-12 77.4 154 33.1
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 1.1e-12 77.4 146 30.8
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.1e-12 77.4 126 35.7
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.1e-12 77.4 179 29.6
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.5e-12 77.0 166 30.1
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 1.5e-12 77.0 153 30.7
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 3.3e-12 75.9 160 28.8
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.3e-12 75.9 166 30.1
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 3.3e-12 75.9 164 31.1
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 3.3e-12 75.9 146 34.2
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 4.3e-12 75.5 164 32.3
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 4.3e-12 75.5 128 35.9
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 4.3e-12 75.5 147 29.9
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 5.6e-12 75.1 148 31.1
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 5.6e-12 75.1 173 27.7
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 7.4e-12 74.7 158 29.1
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 7.4e-12 74.7 151 31.8
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 9.6e-12 74.3 172 26.7
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 9.6e-12 74.3 136 33.8
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 9.6e-12 74.3 159 29.6
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 9.6e-12 74.3 156 31.4
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.3e-11 73.9 158 27.2
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.3e-11 73.9 166 29.5
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 1.3e-11 73.9 150 30.0
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 1.6e-11 73.6 143 32.2
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.1e-11 73.2 151 30.5
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 2.8e-11 72.8 154 29.9
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 3.7e-11 72.4 151 27.8
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.7e-11 72.4 148 29.1
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 3.7e-11 72.4 139 28.8
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 4.8e-11 72.0 140 30.7
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 4.8e-11 72.0 156 29.5
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 4.8e-11 72.0 149 30.9
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 6.2e-11 71.6 155 30.3
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 8.1e-11 71.2 152 28.9
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 8.1e-11 71.2 152 30.3
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 8.1e-11 71.2 153 28.1
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 8.1e-11 71.2 140 33.6
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 8.1e-11 71.2 142 33.1
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 1.1e-10 70.9 184 26.6
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.4e-10 70.5 148 29.7
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.4e-10 70.5 154 29.9
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 1.4e-10 70.5 152 32.2
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.8e-10 70.1 163 27.6
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 2.4e-10 69.7 211 26.5
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.4e-10 69.7 145 29.7
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 3.1e-10 69.3 144 28.5
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 4.0e-10 68.9 137 30.7
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 4.0e-10 68.9 168 29.2
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 4.0e-10 68.9 179 25.7
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 6.9e-10 68.2 181 28.2
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 1.2e-09 67.4 150 28.0
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 2.0e-09 66.6 148 31.8
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 2.0e-09 66.6 161 28.6
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 4.5e-09 65.5 135 28.9
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 5.8e-09 65.1 148 29.7
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 5.8e-09 65.1 146 26.0
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 5.8e-09 65.1 181 27.6
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 7.6e-09 64.7 150 26.0
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 1.0e-08 64.3 133 27.8
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 1.3e-08 63.9 146 27.4
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 1.3e-08 63.9 159 25.2
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 1.3e-08 63.9 181 27.6
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 2.9e-08 62.8 176 26.7
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 4.9e-08 62.0 194 29.9
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 8.4e-08 61.2 154 30.5
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 3.2e-07 59.3 152 25.7
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 7.1e-07 58.2 187 25.1
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 1.6e-06 57.0 150 26.7
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 4.6e-06 55.5 138 29.7
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 4.6e-06 55.5 117 30.8
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 4.6e-06 55.5 152 31.6
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 6.0e-06 55.1 152 25.7
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 7.9e-06 54.7 153 27.5


User provided reference genes

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