Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 0.0e+00 1082.8 568 100.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 2.1e-247 859.0 593 83.0
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 6.2e-244 847.4 591 83.1
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.3e-180 637.1 577 67.9
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.0e-166 589.0 638 59.9
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.1e-158 562.8 643 58.8
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.3e-116 424.5 653 49.9
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 2.9e-100 370.2 707 44.3
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.5e-96 357.8 708 42.9
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.3e-94 349.4 711 43.5
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.6e-93 347.8 703 42.7
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.5e-92 342.4 695 42.3
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 9.4e-91 338.6 702 41.9
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 8.0e-90 335.5 705 41.1
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.0e-76 292.0 726 38.3
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 7.2e-75 285.8 756 36.2
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.6e-72 277.3 682 38.1
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 4.1e-70 270.0 754 37.0
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 4.5e-69 266.5 713 36.3
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.7e-68 264.6 708 37.1
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 8.6e-68 262.3 695 37.0
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 9.5e-67 258.8 692 37.6
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.9e-63 247.3 692 35.7
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 6.4e-63 246.1 707 35.2
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.9e-62 244.6 743 33.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 4.1e-62 243.4 706 36.8
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 5.4e-62 243.0 700 34.7
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 7.0e-62 242.7 698 35.2
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 1.0e-60 238.8 760 34.2
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 5.0e-60 236.5 618 36.9
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 5.0e-60 236.5 746 35.1
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.0e-60 236.5 767 35.1
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 6.6e-60 236.1 657 35.9
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.5e-59 234.2 694 35.2
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.5e-59 234.2 655 36.0
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.1e-58 231.1 589 38.4
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 8.0e-58 229.2 707 34.2
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.8e-57 228.0 722 34.6
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.8e-56 223.0 723 34.6
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.7e-55 221.5 720 33.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.9e-55 220.7 758 33.1
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 8.3e-55 219.2 688 35.2
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.4e-54 218.4 679 35.8
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 3.2e-54 217.2 711 33.5
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 7.1e-54 216.1 625 37.1
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.3e-52 211.8 607 35.6
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.3e-52 211.8 618 35.3
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.7e-52 211.5 679 34.6
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 6.6e-52 209.5 596 36.4
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.9e-51 208.0 697 34.0
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 3.3e-51 207.2 667 35.7
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 4.3e-51 206.8 734 34.5
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 9.5e-51 205.7 692 33.2
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 3.6e-50 203.8 720 32.9
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.7e-50 203.4 722 35.5
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 4.7e-50 203.4 619 37.0
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 6.2e-50 203.0 726 35.0
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.2e-50 203.0 731 34.3
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.2e-50 203.0 731 34.3
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.4e-49 201.8 608 35.7
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.8e-49 201.4 648 33.6
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.8e-49 201.4 709 33.1
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 4.0e-49 200.3 689 32.7
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.0e-49 200.3 246 54.9
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.0e-48 198.0 640 35.3
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 9.9e-48 195.7 701 34.4
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 4.1e-46 190.3 653 32.3
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 7.1e-46 189.5 696 32.3
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 2.1e-45 188.0 728 31.7
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 6.0e-45 186.4 592 35.0
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 7.8e-45 186.0 706 31.2
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.3e-44 185.3 702 32.2
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.3e-44 185.3 634 33.3
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.3e-44 185.3 765 31.0
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.3e-44 184.5 722 31.9
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 2.3e-44 184.5 752 32.7
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.7e-42 176.8 623 33.4
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 8.1e-42 176.0 663 32.6
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.8e-41 174.9 708 31.9
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 2.4e-41 174.5 528 35.4
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.0e-40 171.4 621 33.8
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.6e-40 171.0 593 33.9
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 4.4e-40 170.2 702 32.1
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 7.6e-40 169.5 652 32.2
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 7.6e-40 169.5 624 31.9
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 9.9e-40 169.1 648 33.8
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-39 168.7 620 33.9
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 5.4e-38 163.3 672 32.0
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.6e-37 161.8 618 32.4
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 3.5e-37 160.6 709 29.6
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 6.0e-37 159.8 653 31.9
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.3e-36 158.7 175 57.7
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.3e-36 157.9 604 32.6
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 5.1e-36 156.8 628 31.7
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 8.7e-36 156.0 590 32.5
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.5e-35 155.2 499 35.1
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.9e-35 154.8 624 33.3
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.5e-35 154.5 601 32.3
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.6e-34 151.8 626 32.4
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 2.8e-34 151.0 434 35.5
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.4e-33 148.7 412 36.7
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.5e-32 145.2 537 32.4
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 2.0e-32 144.8 726 28.8
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.6e-32 144.4 729 28.3
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 2.6e-32 144.4 607 32.6
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 5.8e-32 143.3 609 30.9
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 8.4e-31 139.4 728 29.1
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.4e-30 138.7 713 29.3
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 9.3e-30 136.0 606 30.5
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.7e-29 134.4 540 34.1
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 7.9e-29 132.9 321 37.7
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 6.6e-28 129.8 736 27.6
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.5e-27 127.9 691 28.5
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 3.3e-27 127.5 569 32.0
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.3e-27 127.5 499 32.5
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.3e-27 127.5 415 35.2
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.3e-26 125.6 563 32.0
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.8e-26 123.6 709 30.2
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 6.2e-26 123.2 598 31.1
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-25 122.5 226 44.2
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 6.9e-25 119.8 561 31.2
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.6e-24 117.9 568 30.8
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.5e-24 117.1 603 30.0
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 5.8e-24 116.7 562 29.4
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 9.9e-24 115.9 557 30.7
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 9.9e-24 115.9 541 29.8
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.7e-23 115.2 583 30.5
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.4e-22 112.1 283 39.2
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 3.2e-22 110.9 498 30.3
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.6e-21 108.6 622 29.3
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.0e-20 105.9 532 28.4
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.3e-20 105.5 572 29.0
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.8e-20 105.1 616 28.2
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 3.9e-20 104.0 595 28.6
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.9e-20 104.0 185 47.0
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.9e-20 104.0 604 29.0
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.1e-19 102.4 616 28.4
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.9e-19 101.7 579 30.7
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.8e-18 97.8 486 30.0
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.1e-17 95.9 461 29.5
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 6.5e-15 86.7 367 30.8
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.1e-13 81.6 630 26.7
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.6e-13 80.5 325 32.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.0e-12 79.3 303 33.3
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.3e-12 78.2 159 39.6
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.5e-11 75.5 506 27.1
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 1.1e-09 69.3 186 37.6
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.4e-09 68.9 216 35.6
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.4e-09 68.9 286 30.4
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.9e-09 66.6 251 31.9
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 9.0e-09 66.2 475 26.5
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.2e-08 65.9 148 41.9
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 1.0e-07 62.8 127 39.4
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 3.8e-07 60.8 192 35.4
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 2.5e-06 58.2 241 31.5
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 4.2e-06 57.4 203 28.1
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 5.5e-06 57.0 201 34.3
Aa31LG1G18520 Aethionema arabicum HOM05D003795 ORTHO05D026452 9.3e-06 56.2 84 42.9


User provided reference genes

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