Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021431 Solanum tuberosum HOM05D016759 ORTHO05D000169 5.1e-85 318.2 222 100.0
Sopen02g036670 Solanum pennellii HOM05D016759 ORTHO05D000169 8.8e-61 237.7 222 85.1
Solyc02g092090.3 Solanum lycopersicum HOM05D016759 ORTHO05D000169 4.4e-60 235.3 222 84.7
Nitab4.5_0001072g0020 Nicotiana tabacum HOM05D016759 ORTHO05D000169 7.5e-60 234.6 222 78.8
Nitab4.5_0000142g0350 Nicotiana tabacum HOM05D016759 ORTHO05D000169 3.2e-50 202.6 223 73.5
CAN.G1343.5 Capsicum annuum HOM05D016759 ORTHO05D000169 5.9e-49 198.4 229 75.1
PGSC0003DMG400005476 Solanum tuberosum HOM05D000697 ORTHO05D000169 4.1e-26 122.5 220 40.5
Lj7P112T12 Lonicera japonica HOM05D000754 ORTHO05D000169 4.6e-25 119.0 206 44.2
Oeu032433.1 Olea europaea HOM05D000754 ORTHO05D000169 1.0e-24 117.9 218 39.0
Peaxi162Scf00548g00014 Petunia axillaris HOM05D000754 ORTHO05D000169 1.3e-24 117.5 182 62.1
Oeu013337.1 Olea europaea HOM05D000754 ORTHO05D000169 7.3e-23 111.7 221 38.0
Cc07_g07330 Coffea canephora HOM05D000754 ORTHO05D000169 1.2e-22 110.9 248 37.1
PGSC0003DMG400021433 Solanum tuberosum HOM05D016759 ORTHO05D000169 2.1e-22 110.2 76 80.3
Hma1.2p1_1139F.1_g260890 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 8.9e-21 104.8 229 36.2
Migut.H00326 Erythranthe guttata HOM05D000754 ORTHO05D000169 1.2e-20 104.4 215 38.6
Rhsim08G0091200 Rhododendron simsii HOM05D000754 ORTHO05D000169 1.1e-18 97.8 262 36.6
CSS0007195 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 2.4e-18 96.7 212 41.5
Nitab4.5_0006965g0010 Nicotiana tabacum HOM05D000754 ORTHO05D000169 3.2e-18 96.3 269 38.7
CSS0026493 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 5.4e-18 95.5 212 41.0
QL06p038974 Quercus lobata HOM05D000754 ORTHO05D000169 5.4e-18 95.5 227 35.2
Rhsim08G0090600 Rhododendron simsii HOM05D000754 ORTHO05D000169 7.1e-18 95.1 262 37.0
DCAR_010801 Daucus carota HOM05D000754 ORTHO05D000169 3.5e-17 92.8 209 33.5
CSS0034114 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 6.0e-17 92.0 225 35.6
MD02G1189300 Malus domestica HOM05D000754 ORTHO05D000169 1.3e-16 90.9 225 36.4
vmacro23300 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 3.9e-16 89.4 258 36.4
Hma1.2p1_0424F.1_g150490 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 8.7e-16 88.2 204 33.3
Duzib264G0179 Durio zibethinus HOM05D000754 ORTHO05D000169 1.9e-15 87.0 216 33.8
Manes.13G109400 Manihot esculenta HOM05D000754 ORTHO05D000169 1.9e-15 87.0 222 34.2
Prupe.6G217300 Prunus persica HOM05D000754 ORTHO05D000169 1.9e-15 87.0 234 34.2
Thecc.01G075900 Theobroma cacao HOM05D000754 ORTHO05D000169 2.5e-15 86.7 224 37.1
Cpa.g.sc129.74 Carica papaya HOM05D000754 ORTHO05D000169 3.3e-15 86.3 215 34.4
DCAR_025821 Daucus carota HOM05D000754 ORTHO05D000169 3.3e-15 86.3 219 34.2
Potri.007G006900 Populus trichocarpa HOM05D000754 ORTHO05D000169 3.3e-15 86.3 216 37.5
Lsat_1_v5_gn_2_80220 Lactuca sativa HOM05D000754 ORTHO05D000169 7.3e-15 85.1 190 36.8
SalBow3G0289 Salvia bowleyana HOM05D000754 ORTHO05D000169 7.3e-15 85.1 211 45.0
TWI74G1229 Tripterygium wilfordii HOM05D000754 ORTHO05D000169 1.3e-14 84.3 215 31.6
Duzib187G1715 Durio zibethinus HOM05D000754 ORTHO05D000169 1.6e-14 84.0 216 35.2
FAN26G0075 Fragaria x ananassa HOM05D000754 ORTHO05D000169 3.6e-14 82.8 224 34.8
MD15G1300200 Malus domestica HOM05D000754 ORTHO05D000169 3.6e-14 82.8 231 32.5
FAN19G0912 Fragaria x ananassa HOM05D000754 ORTHO05D000169 8.1e-14 81.6 224 34.4
Gohir.D12G076700 Gossypium hirsutum HOM05D000754 ORTHO05D000169 8.1e-14 81.6 74 55.4
Ciclev10027584m.g Citrus clementina HOM05D000754 ORTHO05D000169 1.4e-13 80.9 215 38.6
COL.COLO4_11611 Corchorus olitorius HOM05D000754 ORTHO05D000169 1.8e-13 80.5 216 32.9
Lj4P165T20 Lonicera japonica HOM05D000754 ORTHO05D000169 1.8e-13 80.5 73 52.1
Oeu033308.1 Olea europaea HOM05D000754 ORTHO05D000169 1.8e-13 80.5 213 33.3
Potri.014G007100 Populus trichocarpa HOM05D000754 ORTHO05D000169 2.4e-13 80.1 216 33.8
CANSAT01G0483 Cannabis sativa HOM05D000754 ORTHO05D000169 3.1e-13 79.7 217 31.8
Gohir.A11G048900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.1e-13 79.7 218 33.9
Gorai.008G085300 Gossypium raimondii HOM05D000754 ORTHO05D000169 5.3e-13 79.0 74 54.1
Manes.12G117300 Manihot esculenta HOM05D000754 ORTHO05D000169 5.3e-13 79.0 217 34.6
Gohir.A02G149900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 6.9e-13 78.6 217 31.8
Gorai.003G032100 Gossypium raimondii HOM05D000754 ORTHO05D000169 6.9e-13 78.6 217 31.8
Gohir.D03G030500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 9.0e-13 78.2 217 31.8
vmacro18014 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 1.2e-12 77.8 74 56.8
FAN23G2905 Fragaria x ananassa HOM05D000754 ORTHO05D000169 2.0e-12 77.0 224 33.9
Gohir.D11G052500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.4e-12 76.3 218 33.0
Duzib147G0338 Durio zibethinus HOM05D000754 ORTHO05D000169 1.3e-11 74.3 216 32.4
Gohir.A12G080000 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.3e-11 74.3 74 51.4
Gorai.007G056900 Gossypium raimondii HOM05D000754 ORTHO05D000169 3.8e-11 72.8 218 32.1
THA.LOC104827731 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 3.8e-11 72.8 219 28.8
arahy.Tifrunner.gnm1.ann1.JTRU7S Arachis hypogaea HOM05D000754 ORTHO05D000169 4.9e-11 72.4 200 30.0
Lsat_1_v5_gn_3_86301 Lactuca sativa HOM05D000754 ORTHO05D000169 4.9e-11 72.4 176 34.1
SGA_v2.0_scaffold15G07496 Striga asiatica HOM05D000754 ORTHO05D000169 4.9e-11 72.4 208 31.2
arahy.Tifrunner.gnm1.ann1.449CV2 Arachis hypogaea HOM05D000754 ORTHO05D000169 1.1e-10 71.2 200 30.0
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 1.1e-10 71.2 72 51.4
Nn6g34519 Nelumbo nucifera HOM05D000754 ORTHO05D000169 1.1e-10 71.2 195 32.3
TAR628G1392 Trochodendron aralioides HOM05D000754 ORTHO05D000169 1.4e-10 70.9 194 30.4
Sabra14G0006500 Salix brachista HOM05D000754 ORTHO05D000169 3.2e-10 69.7 197 33.5
RcHm_v2.0_Chr2g0108691 Rosa chinensis HOM05D000754 ORTHO05D000169 4.2e-10 69.3 227 30.4
vmacro23468 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 4.2e-10 69.3 227 34.8
TAR376G1084 Trochodendron aralioides HOM05D000754 ORTHO05D000169 5.4e-10 68.9 200 31.5
Atru.chr3.1056 Acer truncatum HOM05D000754 ORTHO05D000169 9.3e-10 68.2 211 31.3
Thhalv10027117m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 9.3e-10 68.2 222 30.2
FAN28G2566 Fragaria x ananassa HOM05D000754 ORTHO05D000169 9.3e-10 68.2 219 31.5
Aqoxy6G02482 Aquilegia oxysepala HOM05D000754 ORTHO05D000169 1.2e-09 67.8 64 53.1
Sopen02g036690 Solanum pennellii HOM05D016759 ORTHO05D000169 1.2e-09 67.8 76 57.9
CARHR279860 Cardamine hirsuta HOM05D000754 ORTHO05D000169 2.1e-09 67.0 73 41.1
Gohir.A12G078400 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.1e-09 67.0 82 46.3
Cfa004385 Carpinus fangiana HOM05D000754 ORTHO05D000169 3.5e-09 66.2 233 34.8
unitig_52.g17604 Utricularia gibba HOM05D000754 ORTHO05D000169 3.5e-09 66.2 73 47.9
HanXRQChr07g0189251 Helianthus annuus HOM05D000754 ORTHO05D000169 6.0e-09 65.5 73 45.2
Sc03g0002510 Simmondsia chinensis HOM05D000697 ORTHO05D000169 6.0e-09 65.5 69 49.3
C02p64350 Brassica napus HOM05D000754 ORTHO05D000169 7.9e-09 65.1 73 43.8
BolC1t00145H Brassica oleracea HOM05D000754 ORTHO05D000169 1.0e-08 64.7 238 29.0
Gohir.D12G076600 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.0e-08 64.7 82 43.9
HanXRQChr14g0445391 Helianthus annuus HOM05D000754 ORTHO05D000169 1.0e-08 64.7 73 50.7
Aa31LG6G14610 Aethionema arabicum HOM05D000754 ORTHO05D000169 1.3e-08 64.3 61 55.7
BcaC06g33372 Brassica carinata HOM05D000754 ORTHO05D000169 1.3e-08 64.3 236 30.1
A02p44090 Brassica napus HOM05D000754 ORTHO05D000169 1.8e-08 63.9 73 42.5
BraA02t09332Z Brassica rapa HOM05D000754 ORTHO05D000169 1.8e-08 63.9 73 42.5
CARHR246120 Cardamine hirsuta HOM05D000754 ORTHO05D000169 1.8e-08 63.9 62 56.5
Gorai.008G085200 Gossypium raimondii HOM05D000754 ORTHO05D000169 2.3e-08 63.5 82 43.9
Psat0ss26165g0040 Pisum sativum HOM05D000754 ORTHO05D000169 2.3e-08 63.5 209 27.8
BcaC03g18357 Brassica carinata HOM05D000754 ORTHO05D000169 3.0e-08 63.2 73 42.5
BolC2t12498H Brassica oleracea HOM05D000754 ORTHO05D000169 3.0e-08 63.2 73 42.5
MBI16_g45152_MAGBIO Magnolia biondii HOM05D000754 ORTHO05D000169 3.0e-08 63.2 65 52.3
HanXRQChr12g0376421 Helianthus annuus HOM05D000754 ORTHO05D000169 3.9e-08 62.8 73 46.6
Lj4g0006564 Lotus japonicus HOM05D000754 ORTHO05D000169 3.9e-08 62.8 210 28.6
TPR.G3728 Trifolium pratense HOM05D000754 ORTHO05D000169 5.1e-08 62.4 215 27.9
HanXRQChr09g0255311 Helianthus annuus HOM05D000754 ORTHO05D000169 6.7e-08 62.0 73 42.5
AL334U10020 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 8.7e-08 61.6 214 25.7
C07p62610 Brassica napus HOM05D000754 ORTHO05D000169 8.7e-08 61.6 246 29.7
CiPaw.01G002300 Carya illinoinensis HOM05D000754 ORTHO05D000169 8.7e-08 61.6 225 36.9
Dinv23041 Davidia involucrata HOM05D000754 ORTHO05D000169 8.7e-08 61.6 162 32.7
C01p01480 Brassica napus HOM05D000754 ORTHO05D000169 1.9e-07 60.5 240 28.3
Nn5g30657 Nelumbo nucifera HOM05D000754 ORTHO05D000169 2.5e-07 60.1 65 47.7
THA.LOC104804197 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 2.5e-07 60.1 73 46.6
Medtr4g097440 Medicago truncatula HOM05D000754 ORTHO05D000169 3.3e-07 59.7 215 27.9
PGR004G2429 Punica granatum HOM05D000754 ORTHO05D000169 3.3e-07 59.7 225 35.1
Sp2g28950 Schrenkiella parvula HOM05D000754 ORTHO05D000169 4.3e-07 59.3 73 39.7
A01p01320 Brassica napus HOM05D000754 ORTHO05D000169 5.6e-07 58.9 240 28.3
A03p65530 Brassica napus HOM05D000754 ORTHO05D000169 5.6e-07 58.9 236 31.8
BraA01t00129Z Brassica rapa HOM05D000754 ORTHO05D000169 5.6e-07 58.9 240 28.3
VMungo1215G0337 Vigna mungo HOM05D000754 ORTHO05D000169 5.6e-07 58.9 72 45.8
AL7G12950 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 7.4e-07 58.5 231 29.4
AT4G37730 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 7.4e-07 58.5 229 27.9
Glyma.17G158900 Glycine max HOM05D000754 ORTHO05D000169 7.4e-07 58.5 198 28.3
MSTRG.2807 Avicennia marina HOM05D000754 ORTHO05D000169 9.6e-07 58.2 188 28.2
Ca_22096_v3 Cicer arietinum L. HOM05D000754 ORTHO05D000169 9.6e-07 58.2 214 39.7
ClCG01G017780 Citrullus lanatus HOM05D000754 ORTHO05D000169 9.6e-07 58.2 199 31.7
PGR102G3091 Punica granatum HOM05D000754 ORTHO05D000169 9.6e-07 58.2 219 37.9
Sp7g35380 Schrenkiella parvula HOM05D000754 ORTHO05D000169 9.6e-07 58.2 253 28.9
Sc07g0000450 Simmondsia chinensis HOM05D000754 ORTHO05D000169 9.6e-07 58.2 76 42.1
BcaB02g09902 Brassica carinata HOM05D000754 ORTHO05D000169 1.3e-06 57.8 71 39.4
Glyma.01G195800 Glycine max HOM05D000754 ORTHO05D000169 1.3e-06 57.8 198 29.8
AL4G12430 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 1.6e-06 57.4 61 47.5
Carub.0007s0252 Capsella rubella HOM05D000754 ORTHO05D000169 1.6e-06 57.4 219 27.9
AL8G43580 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 2.1e-06 57.0 205 24.9
THA.LOC104819272 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 2.8e-06 56.6 216 26.9
Eucgr.H02330 Eucalyptus grandis HOM05D000754 ORTHO05D000169 3.6e-06 56.2 196 32.1
CAN.G1239.10 Capsicum annuum HOM05D000754 ORTHO05D000169 4.8e-06 55.8 60 48.3
CARHR158850 Cardamine hirsuta HOM05D000754 ORTHO05D000169 4.8e-06 55.8 58 46.6
AUR62004028 Chenopodium quinoa HOM05D000754 ORTHO05D000169 4.8e-06 55.8 67 47.8
Medtr5g015090 Medicago truncatula HOM05D000754 ORTHO05D000169 4.8e-06 55.8 72 44.4
CsaV3_6G044300 Cucumis sativus L. HOM05D000754 ORTHO05D000169 6.2e-06 55.5 212 29.7
Glyma.11G045900 Glycine max HOM05D000754 ORTHO05D000169 6.2e-06 55.5 72 44.4
Sp4g01890 Schrenkiella parvula HOM05D000754 ORTHO05D000169 6.2e-06 55.5 62 45.2
SpUn0042_0040 Schrenkiella parvula HOM05D000754 ORTHO05D000169 6.2e-06 55.5 62 45.2
Glyma.05G108200 Glycine max HOM05D000754 ORTHO05D000169 8.1e-06 55.1 73 38.4


User provided reference genes

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