Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 4.4e-22 107.1 54 100.0
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 1.3e-21 105.5 54 98.1
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 4.7e-16 87.0 50 84.0
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 4.7e-16 87.0 50 84.0
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 6.1e-16 86.7 54 79.6
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 1.0e-15 85.9 55 78.2
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 1.0e-15 85.9 53 81.1
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 1.4e-15 85.5 52 78.8
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 2.3e-15 84.7 52 76.9
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 3.0e-15 84.3 51 78.4
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 3.0e-15 84.3 53 75.5
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 4.0e-15 84.0 49 83.7
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 4.0e-15 84.0 55 78.2
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 1.2e-14 82.4 52 73.1
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 2.0e-14 81.6 55 74.5
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 2.6e-14 81.3 50 78.0
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 2.6e-14 81.3 55 72.7
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 2.6e-14 81.3 55 72.7
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 5.7e-14 80.1 51 72.5
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 7.5e-14 79.7 55 72.7
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 1.3e-13 79.0 52 75.0
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 1.7e-13 78.6 51 74.5
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 8.3e-13 76.3 47 76.6
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 8.3e-13 76.3 50 78.0
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 8.3e-13 76.3 52 71.2
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 1.1e-12 75.9 51 70.6
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 1.8e-12 75.1 53 75.5
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 1.8e-12 75.1 48 79.2
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 3.2e-12 74.3 52 71.2
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 5.4e-12 73.6 55 72.7
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 2.0e-11 71.6 48 72.9
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 2.0e-11 71.6 48 72.9
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 2.0e-11 71.6 48 72.9
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 2.0e-11 71.6 43 79.1
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 3.5e-11 70.9 52 73.1
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 4.5e-11 70.5 48 72.9
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 4.5e-11 70.5 48 72.9
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 4.5e-11 70.5 48 72.9
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 4.5e-11 70.5 48 72.9
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 1.3e-10 68.9 56 66.1
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 1.7e-10 68.6 35 91.4
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 2.3e-10 68.2 50 72.0
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 2.9e-10 67.8 45 73.3
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 2.9e-10 67.8 49 67.3
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 3.9e-10 67.4 54 66.7
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 5.0e-10 67.0 50 72.0
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 5.0e-10 67.0 36 86.1
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 5.0e-10 67.0 36 86.1
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 5.0e-10 67.0 35 88.6
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 1.9e-09 65.1 34 88.2
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 1.9e-09 65.1 59 59.3
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 1.9e-09 65.1 34 88.2
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 5.6e-09 63.5 37 81.1
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 2.8e-08 61.2 47 63.8
Rhsim08G0091900 Rhododendron simsii HOM05D008250 ORTHO05D010361 3.6e-08 60.8 98 40.8
SGA_v2.0_scaffold15G07489 Striga asiatica HOM05D008250 ORTHO05D010361 8.0e-08 59.7 37 81.1
Haze_15258 Corylus avellana HOM05D008250 ORTHO05D010361 5.2e-07 57.0 35 77.1
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 1.2e-06 55.8 55 54.5
CSS0002791 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 2.6e-06 54.7 37 67.6
CSS0014718 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 2.6e-06 54.7 37 67.6


User provided reference genes

Program Settings