Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 4.4e-203 711.1 358 100.0
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.5e-190 668.7 358 92.7
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.1e-185 653.3 358 92.5
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 6.2e-165 584.3 360 81.7
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 7.4e-158 560.8 359 79.1
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.4e-156 556.6 355 78.6
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.1e-156 555.4 360 78.1
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.3e-151 540.0 358 77.4
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 8.7e-135 484.2 353 70.0
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 9.4e-121 437.6 314 74.2
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 2.3e-119 433.0 366 61.2
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 4.4e-118 428.7 356 62.4
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 9.7e-118 427.6 367 61.3
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.8e-111 404.4 353 62.6
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 4.1e-108 395.6 363 59.2
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 7.0e-108 394.8 360 60.8
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 3.5e-107 392.5 372 54.8
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 7.2e-105 384.8 357 57.1
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.2e-104 384.0 363 55.9
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.4e-103 380.6 366 56.0
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.4e-103 380.6 366 56.0
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.6e-102 376.3 368 56.8
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.7e-102 375.2 376 54.8
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.3e-101 374.0 363 54.8
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 2.2e-101 373.2 358 57.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 4.8e-101 372.1 356 53.9
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 8.3e-101 371.3 361 55.4
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.4e-100 370.5 377 53.8
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.8e-100 370.2 368 54.9
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 3.1e-100 369.4 359 52.4
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 7.0e-100 368.2 359 56.3
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.2e-99 367.5 360 55.0
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.7e-98 363.6 376 52.4
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.3e-98 363.2 365 52.1
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.9e-98 362.8 365 52.1
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 9.5e-97 357.8 330 58.5
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.6e-96 357.1 361 52.6
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.7e-96 355.5 354 53.4
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 4.7e-96 355.5 367 53.1
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 8.0e-96 354.8 367 52.6
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.4e-95 354.0 362 53.0
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.4e-95 354.0 282 62.1
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 3.0e-95 352.8 362 53.6
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 6.8e-95 351.7 364 51.4
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.6e-94 349.7 371 50.9
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 4.4e-94 349.0 364 52.7
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 9.8e-94 347.8 366 52.2
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 9.8e-94 347.8 365 53.2
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.3e-93 347.4 367 51.8
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.7e-93 347.1 359 51.5
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 1.7e-93 347.1 370 50.5
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.2e-93 346.7 365 51.0
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.8e-93 346.3 367 51.8
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.4e-92 344.0 363 49.3
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.4e-92 344.0 367 51.8
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 3.1e-92 342.8 363 51.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 5.4e-92 342.0 363 52.1
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 7.0e-92 341.7 373 51.2
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 7.0e-92 341.7 373 51.2
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.2e-91 340.9 368 51.6
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.7e-91 339.7 365 50.4
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 4.5e-91 339.0 354 52.5
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 5.9e-91 338.6 359 51.8
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 5.9e-91 338.6 366 51.4
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 2.3e-90 336.7 365 50.4
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 3.8e-90 335.9 365 49.9
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 8.6e-90 334.7 366 50.8
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 9.5e-89 331.3 362 48.1
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 1.6e-88 330.5 269 58.0
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.6e-88 330.5 357 49.6
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.8e-88 329.7 366 50.8
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 3.6e-88 329.3 357 49.3
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.6e-88 329.3 353 50.1
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 4.7e-88 328.9 352 50.6
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.4e-87 327.4 366 50.0
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.0e-87 325.9 364 51.9
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.8e-86 322.0 396 46.7
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 7.5e-86 321.6 356 53.1
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 7.5e-86 321.6 359 49.3
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.2e-85 320.1 396 46.0
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.2e-85 320.1 396 46.0
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.9e-85 318.9 360 47.2
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 4.9e-85 318.9 357 48.2
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 4.9e-85 318.9 354 50.6
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 6.4e-85 318.5 269 58.0
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 2.4e-84 316.6 355 51.0
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.2e-83 314.3 354 50.0
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.6e-83 313.9 369 46.6
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.0e-83 313.5 283 55.5
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 2.7e-83 313.2 294 54.4
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 4.6e-83 312.4 355 49.0
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.0e-82 311.2 372 48.9
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.0e-82 311.2 375 49.9
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.7e-82 310.5 356 48.6
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.0e-82 309.7 346 48.6
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 3.9e-82 309.3 376 50.3
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.1e-81 307.8 352 48.9
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.9e-81 307.0 358 46.9
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 4.3e-81 305.8 357 48.7
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 4.3e-81 305.8 327 51.7
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 5.6e-81 305.4 361 49.0
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 5.6e-81 305.4 356 48.0
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 7.3e-81 305.1 352 48.6
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 7.3e-81 305.1 293 53.9
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 8.0e-80 301.6 363 47.4
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.4e-79 300.8 352 48.0
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 5.2e-79 298.9 358 47.5
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 5.2e-79 298.9 369 46.1
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 6.8e-79 298.5 359 46.5
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 8.9e-79 298.1 353 47.0
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 2.0e-78 297.0 360 47.8
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.0e-78 297.0 360 48.1
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 2.6e-78 296.6 355 47.3
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 3.4e-78 296.2 354 46.6
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 3.4e-78 296.2 355 47.6
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 5.8e-78 295.4 347 47.3
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 2.9e-77 293.1 356 47.2
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 3.7e-77 292.7 353 45.9
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 1.1e-76 291.2 360 46.7
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.4e-76 290.8 355 45.6
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 4.1e-76 289.3 352 46.6
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.7e-75 286.6 347 46.1
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 6.0e-75 285.4 281 52.0
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.3e-74 283.5 266 55.6
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 5.0e-74 282.3 353 45.6
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.1e-71 274.6 317 49.5
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.1e-71 274.6 329 45.6
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 2.3e-71 273.5 257 54.9
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.3e-69 267.7 302 48.3
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.7e-69 267.3 354 46.3
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.7e-69 267.3 259 53.3
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 3.2e-68 263.1 297 50.8
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.2e-67 261.2 322 47.5
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 6.0e-67 258.8 309 46.6
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 6.0e-67 258.8 315 47.3
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 5.1e-66 255.8 273 46.9
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 5.1e-66 255.8 273 46.9
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.1e-65 254.6 371 42.3
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 3.3e-65 253.1 273 46.5
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 3.1e-63 246.5 314 45.2
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.2e-61 240.4 365 41.6
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.7e-58 230.7 223 53.4
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.3e-58 230.3 327 39.4
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.9e-57 227.3 217 53.0
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 2.9e-53 213.4 347 38.9
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 3.2e-52 209.9 261 46.0
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 8.7e-50 201.8 217 52.1
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.5e-49 201.1 322 39.8
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.1e-48 197.2 332 35.8
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.8e-47 194.1 318 40.9
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 3.0e-42 176.8 189 48.1
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.8e-40 170.2 181 50.3
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.4e-39 167.2 250 39.2
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 7.6e-38 162.2 134 54.5
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 1.1e-36 158.3 202 48.0
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 6.0e-35 152.5 450 26.4
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.6e-33 146.0 152 55.3
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.0e-31 139.8 128 64.1
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 2.2e-29 134.0 146 46.6
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 2.2e-29 134.0 168 47.0
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 4.6e-27 126.3 159 47.8
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 7.4e-25 119.0 77 67.5
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 6.3e-24 115.9 286 28.3
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 6.3e-24 115.9 280 31.1
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 2.2e-21 107.5 113 47.8
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 4.2e-20 103.2 134 44.8
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 9.7e-17 92.0 105 40.0
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.7e-16 91.3 104 50.0
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 4.8e-16 89.7 333 26.1
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.4e-15 87.4 94 46.8
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 4.1e-15 86.7 125 38.4
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.5e-14 84.7 107 43.9
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 1.5e-14 84.7 97 49.5
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.7e-13 81.3 138 32.6
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.1e-12 78.6 76 51.3
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 2.7e-11 73.9 150 34.0
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 7.9e-11 72.4 180 28.3
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 3.9e-10 70.1 55 61.8
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 2.0e-09 67.8 56 58.9
PGSC0003DMG400031315 Solanum tuberosum HOM05D047501 ORTHO05D004299 2.2e-08 64.3 76 47.4
PGSC0003DMG400034094 Solanum tuberosum HOM05D047501 ORTHO05D004299 2.2e-08 64.3 76 47.4
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.1e-07 62.0 43 65.1
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 2.4e-07 60.8 49 63.3
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 7.0e-07 59.3 43 62.8
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 7.7e-06 55.8 41 65.9


User provided reference genes

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