Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 2.4e-145 518.8 269 100.0
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 8.3e-138 493.8 269 96.3
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 1.4e-137 493.0 269 96.3
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 2.4e-105 386.0 282 77.3
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 5.3e-100 368.2 272 75.4
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 1.6e-96 356.7 272 74.6
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 1.9e-73 280.0 273 60.1
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 7.9e-72 274.6 240 60.8
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 1.3e-71 273.9 218 68.8
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 7.4e-70 268.1 294 52.7
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 1.3e-69 267.3 200 69.0
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 1.3e-69 267.3 239 60.7
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 2.8e-69 266.2 266 57.5
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 3.7e-69 265.8 200 66.5
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.4e-68 263.8 265 54.7
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 1.4e-68 263.8 268 55.2
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 1.8e-68 263.5 223 61.4
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 1.8e-68 263.5 212 64.2
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 2.4e-68 263.1 201 67.2
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.4e-68 263.1 223 61.4
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 2.4e-68 263.1 239 60.3
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 2.4e-68 263.1 234 62.0
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 2.4e-68 263.1 256 59.4
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 3.1e-68 262.7 223 61.0
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 3.1e-68 262.7 220 64.1
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 6.9e-68 261.5 243 60.1
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.5e-67 260.4 265 58.5
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.5e-67 260.4 265 58.5
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 2.6e-67 259.6 271 53.5
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 1.0e-66 257.7 249 57.8
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 6.5e-66 255.0 217 60.8
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 8.5e-66 254.6 218 62.4
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 1.4e-65 253.8 284 52.8
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 3.2e-65 252.7 214 62.1
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 3.2e-65 252.7 208 63.0
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 3.2e-65 252.7 277 52.0
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 4.2e-65 252.3 275 53.8
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 5.5e-65 251.9 178 70.8
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 5.5e-65 251.9 257 56.0
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 7.2e-65 251.5 251 55.8
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 7.2e-65 251.5 222 61.7
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 7.2e-65 251.5 218 62.4
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 9.4e-65 251.1 239 56.9
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 2.7e-64 249.6 282 52.1
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 2.7e-64 249.6 271 54.2
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 7.9e-64 248.1 279 53.4
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 1.4e-63 247.3 268 54.1
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 1.4e-63 247.3 268 53.7
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 1.8e-63 246.9 240 57.1
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 1.8e-63 246.9 256 52.7
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 2.3e-63 246.5 272 53.3
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 2.3e-63 246.5 194 63.4
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 3.0e-63 246.1 211 61.6
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 3.9e-63 245.7 210 59.5
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 6.7e-63 245.0 253 53.8
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.1e-62 244.2 205 62.9
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 2.0e-62 243.4 213 62.0
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 2.6e-62 243.0 260 55.0
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 5.7e-62 241.9 213 62.0
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 5.7e-62 241.9 214 61.7
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 5.7e-62 241.9 211 60.7
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 7.4e-62 241.5 275 52.4
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 1.7e-61 240.4 205 63.4
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 1.7e-61 240.4 290 52.4
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 2.2e-61 240.0 212 59.0
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 2.8e-61 239.6 202 60.4
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 2.8e-61 239.6 200 63.5
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 4.8e-61 238.8 219 58.4
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 4.8e-61 238.8 200 64.0
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 6.3e-61 238.4 211 59.2
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 1.4e-60 237.3 214 59.3
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 3.1e-60 236.1 251 53.8
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 6.9e-60 235.0 199 63.3
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 1.2e-59 234.2 210 60.0
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 1.5e-59 233.8 207 57.5
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 2.0e-59 233.4 213 58.7
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 2.0e-59 233.4 212 58.5
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 2.0e-59 233.4 192 62.0
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 4.5e-59 232.3 280 50.0
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 1.0e-58 231.1 275 49.5
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 1.3e-58 230.7 212 58.0
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 2.2e-58 229.9 210 57.6
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 1.1e-57 227.6 183 63.4
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 4.2e-57 225.7 284 49.6
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 4.7e-56 222.2 231 53.7
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 7.9e-56 221.5 194 60.3
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 1.8e-55 220.3 205 56.1
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 5.7e-54 215.3 193 59.6
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 2.2e-53 213.4 248 52.0
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 6.3e-53 211.8 154 75.3
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 8.2e-53 211.5 267 49.1
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 9.1e-52 208.0 257 45.1
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 1.3e-50 204.1 167 62.9
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 1.9e-49 200.3 302 44.0
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 2.5e-49 199.9 153 69.9
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 8.8e-47 191.4 154 64.3
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 2.0e-46 190.3 216 50.9
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 2.6e-46 189.9 221 52.5
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.6e-46 189.9 143 68.5
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 9.7e-46 188.0 202 55.0
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 3.7e-45 186.0 177 58.2
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 2.4e-44 183.3 167 56.9
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 5.0e-42 175.6 140 62.1
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 3.2e-41 172.9 150 64.0
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 4.2e-41 172.6 180 53.9
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 1.6e-40 170.6 208 43.3
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 9.8e-38 161.4 149 61.1
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 2.8e-37 159.8 207 44.4
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 3.5e-35 152.9 181 56.4
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 5.0e-34 149.1 116 62.1
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 3.2e-33 146.4 154 53.9
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 5.7e-30 135.6 225 38.2
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 1.7e-29 134.0 200 38.5
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 1.9e-25 120.6 251 35.9
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 3.3e-25 119.8 100 68.0
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.9e-21 106.7 179 38.0
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.9e-21 106.7 179 38.0
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 6.4e-21 105.5 95 53.7
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 2.8e-16 90.1 86 54.7
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 1.4e-15 87.8 123 39.0
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 2.0e-14 84.0 234 30.3
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 5.4e-12 75.9 103 46.6
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 7.0e-12 75.5 173 34.1
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 1.5e-06 57.8 127 36.2


User provided reference genes

Program Settings