Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 1.2e-77 293.1 149 100.0
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 4.0e-73 278.1 147 97.3
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 3.2e-67 258.5 138 96.4
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 6.6e-60 234.2 147 81.0
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 7.1e-38 161.0 96 84.4
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 7.8e-37 157.5 140 56.4
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.3e-35 152.1 132 58.3
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 9.5e-35 150.6 133 61.7
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 2.4e-33 146.0 126 57.9
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 6.8e-33 144.4 121 60.3
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 2.0e-32 142.9 138 51.4
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 9.9e-32 140.6 141 53.2
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 8.4e-31 137.5 143 51.0
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 1.2e-29 133.7 123 56.9
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 4.6e-29 131.7 124 54.8
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.3e-28 130.2 132 50.0
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 2.3e-28 129.4 122 54.9
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 2.3e-28 129.4 123 56.1
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.9e-28 128.6 151 48.3
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 5.6e-27 124.8 120 55.8
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 1.6e-26 123.2 132 48.5
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 2.1e-26 122.9 123 52.8
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 2.8e-26 122.5 121 53.7
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 2.8e-26 122.5 91 63.7
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 6.2e-26 121.3 128 51.6
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 6.2e-26 121.3 137 46.7
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 1.1e-25 120.6 134 50.7
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 3.1e-25 119.0 136 47.8
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.0e-25 118.6 115 54.8
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 5.2e-25 118.2 136 48.5
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 5.2e-25 118.2 122 50.0
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 6.9e-25 117.9 137 47.4
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 6.9e-25 117.9 137 48.9
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 1.2e-24 117.1 120 56.7
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 1.2e-24 117.1 116 52.6
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 2.0e-24 116.3 122 49.2
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 3.4e-24 115.5 117 49.6
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 3.4e-24 115.5 138 46.4
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 3.4e-24 115.5 127 51.2
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 5.8e-24 114.8 140 45.7
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 7.6e-24 114.4 138 45.7
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 7.6e-24 114.4 120 53.3
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 7.6e-24 114.4 116 52.6
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 9.9e-24 114.0 120 50.8
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 9.9e-24 114.0 119 51.3
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.7e-23 113.2 120 53.3
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 1.7e-23 113.2 135 44.4
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 2.9e-23 112.5 117 48.7
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 3.8e-23 112.1 120 53.3
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 1.4e-22 110.2 124 49.2
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 1.9e-22 109.8 135 47.4
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 2.4e-22 109.4 153 44.4
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 2.4e-22 109.4 130 48.5
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 3.2e-22 109.0 112 48.2
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 5.4e-22 108.2 130 46.9
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 5.4e-22 108.2 129 47.3
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 9.3e-22 107.5 106 52.8
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 1.2e-21 107.1 126 45.2
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 1.2e-21 107.1 137 44.5
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 2.7e-21 105.9 113 48.7
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 2.7e-21 105.9 130 46.9
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 3.5e-21 105.5 129 48.8
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 3.5e-21 105.5 104 52.9
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.0e-20 104.0 123 47.2
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 1.0e-20 104.0 132 46.2
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 1.0e-20 104.0 137 44.5
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 1.7e-20 103.2 119 49.6
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 2.3e-20 102.8 131 46.6
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 5.1e-20 101.7 122 45.9
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 6.6e-20 101.3 123 47.2
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 6.6e-20 101.3 129 46.5
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.1e-19 100.5 139 43.2
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.1e-19 100.5 138 42.0
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 1.5e-19 100.1 122 47.5
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.9e-19 99.8 124 47.6
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 2.5e-19 99.4 121 47.9
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 4.3e-19 98.6 89 55.1
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 4.3e-19 98.6 120 47.5
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 7.3e-19 97.8 122 46.7
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 9.6e-19 97.4 119 47.9
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.3e-18 97.1 119 48.7
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 1.6e-18 96.7 128 46.9
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 2.8e-18 95.9 119 47.9
Nitab4.5_0000978g0250 Nicotiana tabacum HOM05D007217 ORTHO05D009092 3.6e-18 95.5 116 48.3
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 4.8e-18 95.1 122 45.1
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 4.8e-18 95.1 112 43.8
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 6.2e-18 94.7 121 46.3
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 6.2e-18 94.7 115 47.0
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 6.2e-18 94.7 122 44.3
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 8.1e-18 94.4 84 59.5
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 2.4e-17 92.8 127 44.9
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 3.1e-17 92.4 127 44.9
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 4.0e-17 92.0 83 57.8
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 6.9e-17 91.3 83 55.4
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 2.0e-16 89.7 83 56.6
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 1.7e-15 86.7 103 48.5
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 3.8e-15 85.5 180 33.9
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 8.4e-15 84.3 135 36.3
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.0e-12 77.4 121 40.5
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 1.3e-12 77.0 150 36.7
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 3.0e-12 75.9 92 44.6
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 3.0e-12 75.9 92 44.6
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 1.9e-11 73.2 53 69.8
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 2.8e-10 69.3 58 56.9
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 1.3e-07 60.5 98 40.8
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 1.7e-07 60.1 98 40.8
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 2.2e-07 59.7 61 50.8
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 2.2e-07 59.7 61 50.8
Peaxi162Scf00378g00634 Petunia axillaris HOM05D007217 ORTHO05D009092 1.1e-06 57.4 87 42.5
Zm00001eb228930 Zea mays HOM05D007217 ORTHO05D009092 1.4e-06 57.0 77 42.9
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 1.9e-06 56.6 125 35.2


User provided reference genes

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