Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 0.0e+00 1180.6 629 100.0
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 5.5e-257 891.0 639 80.4
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.1e-252 876.7 636 79.9
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.6e-224 783.1 626 73.6
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 4.4e-222 775.0 624 69.4
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 7.0e-204 714.5 629 65.0
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 1.6e-136 490.7 634 48.3
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.1e-131 473.8 633 48.0
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 5.7e-129 465.7 683 45.2
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.1e-127 461.5 645 47.8
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 5.9e-126 455.7 685 45.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 2.9e-125 453.4 635 45.8
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 2.8e-120 436.8 643 45.3
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.4e-118 429.9 635 43.6
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 5.9e-118 429.1 636 45.3
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.7e-117 427.6 633 46.1
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 2.9e-117 426.8 636 44.5
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.9e-116 424.1 662 45.5
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.5e-116 423.7 635 45.2
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 3.2e-116 423.3 650 45.7
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 1.2e-115 421.4 626 43.9
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.6e-115 421.0 635 42.8
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 4.7e-115 419.5 631 43.6
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 6.1e-115 419.1 643 43.9
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 6.1e-115 419.1 636 44.5
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 2.0e-113 414.1 649 43.6
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.6e-113 413.7 639 46.2
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 5.7e-113 412.5 632 44.6
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 3.7e-112 409.8 667 42.6
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.4e-111 407.1 651 43.5
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.9e-111 405.6 635 43.8
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.9e-111 405.6 632 45.7
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 9.1e-111 405.2 650 45.4
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.7e-109 401.0 666 43.2
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.9e-109 400.2 638 44.5
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.4e-108 397.9 651 43.8
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.9e-108 397.5 652 43.4
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 3.6e-107 393.3 635 43.1
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 8.0e-107 392.1 669 41.7
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.0e-106 391.7 657 42.6
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.0e-106 391.7 634 40.7
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.4e-106 391.3 634 40.7
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 3.0e-106 390.2 641 42.7
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 2.6e-105 387.1 560 46.8
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.7e-104 384.4 641 42.9
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 2.8e-104 383.6 644 42.7
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.8e-103 380.9 646 42.9
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 2.4e-103 380.6 647 42.0
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 3.6e-99 366.7 631 41.8
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 4.7e-99 366.3 649 41.1
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.4e-98 364.8 656 41.2
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 2.6e-97 360.5 673 40.0
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 4.4e-97 359.8 544 46.0
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 5.7e-97 359.4 668 40.4
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 8.2e-96 355.5 642 41.0
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 7.0e-95 352.4 652 39.1
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 3.5e-94 350.1 649 43.5
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.0e-93 348.6 556 43.5
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.0e-93 348.6 582 43.1
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 5.0e-93 346.3 652 40.2
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.1e-92 345.1 635 40.5
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.1e-92 345.1 557 44.5
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 4.2e-92 343.2 639 40.1
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 7.2e-92 342.4 638 39.8
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.6e-91 341.3 654 39.4
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 2.1e-91 340.9 650 39.8
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.7e-91 340.5 609 41.1
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 6.1e-91 339.3 681 38.8
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 4.0e-90 336.7 633 40.6
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 4.4e-89 333.2 647 40.3
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 5.7e-89 332.8 508 44.7
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 3.7e-88 330.1 646 39.8
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 2.7e-86 323.9 579 40.9
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 1.3e-85 321.6 645 38.9
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 1.3e-85 321.6 642 38.0
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.7e-85 321.2 575 41.0
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.8e-85 320.1 370 49.5
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 3.8e-85 320.1 641 38.7
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.1e-84 318.5 562 41.1
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.5e-84 317.4 635 38.3
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 2.1e-83 314.3 634 37.7
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.2e-81 308.5 633 37.3
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.5e-81 308.1 634 37.7
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.4e-81 306.6 554 40.1
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.7e-80 304.7 638 37.5
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 8.3e-80 302.4 647 38.0
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 7.8e-78 295.8 637 38.3
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 7.8e-78 295.8 637 38.1
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 2.9e-77 293.9 584 37.7
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.2e-75 288.5 635 37.5
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 2.8e-75 287.3 557 38.8
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 2.3e-74 284.3 508 40.0
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.8e-74 282.7 489 40.7
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 2.6e-73 280.8 560 38.4
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.3e-72 278.5 557 38.1
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 2.9e-72 277.3 593 37.4
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 6.4e-72 276.2 638 36.5
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.4e-71 274.2 578 37.5
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 1.6e-70 271.6 561 38.3
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 4.6e-70 270.0 644 35.6
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.5e-68 264.2 329 47.4
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.2e-67 261.9 574 36.1
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 1.2e-67 261.9 559 36.9
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 6.8e-66 256.1 542 38.6
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 6.8e-66 256.1 542 38.6
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 1.4e-63 248.4 338 47.3
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.2e-57 228.8 588 35.7
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 9.9e-57 225.7 564 35.3
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 3.2e-55 220.7 257 49.4
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 7.3e-52 209.5 422 39.6
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 2.4e-50 204.5 426 36.2
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 9.2e-47 192.6 504 33.9
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 5.1e-45 186.8 485 35.3
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 5.1e-45 186.8 485 35.5
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 9.0e-42 176.0 242 44.2
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 4.9e-40 170.2 590 29.7
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.1e-34 152.5 238 39.1
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 4.5e-33 147.1 606 28.7
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 6.0e-30 136.7 300 34.0
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 7.4e-28 129.8 247 41.7
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.6e-25 121.3 467 30.0
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 2.4e-23 114.8 167 38.3
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 2.3e-21 108.2 112 59.8
PGSC0003DMG400009714 Solanum tuberosum HOM05D000928 ORTHO05D000023 1.6e-19 102.1 73 61.6
PGSC0003DMG400006659 Solanum tuberosum HOM05D003340 ORTHO05D003775 1.4e-18 99.0 84 53.6
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 9.0e-18 96.3 118 53.4
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.0e-17 95.1 98 57.1
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 2.0e-17 95.1 246 32.1
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 6.5e-16 90.1 265 29.4
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 5.1e-13 80.5 254 32.3
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 8.7e-13 79.7 53 64.2
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.1e-10 72.8 105 31.4
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.2e-09 69.3 225 28.9
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 2.0e-09 68.6 250 28.4
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 5.0e-08 63.9 34 88.2
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 5.5e-07 60.5 242 27.3
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 7.2e-07 60.1 233 27.5
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 4.6e-06 57.4 139 31.7
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 4.6e-06 57.4 139 31.7
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 4.6e-06 57.4 139 31.7
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 4.6e-06 57.4 139 31.7
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 4.6e-06 57.4 139 31.7
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 4.6e-06 57.4 139 31.7


User provided reference genes

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