Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.3e-163 579.7 296 100.0
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 1.4e-162 576.2 296 99.3
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 1.8e-162 575.9 296 99.0
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 3.0e-149 531.9 296 89.5
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 4.1e-146 521.5 296 90.2
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 2.7e-145 518.8 281 94.0
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 4.5e-145 518.1 296 89.5
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.1e-130 470.3 296 80.1
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 3.1e-130 468.8 296 79.7
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 4.5e-129 464.9 300 78.7
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 1.3e-128 463.4 296 76.7
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 1.3e-128 463.4 296 76.7
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 1.7e-128 463.0 295 79.3
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 2.9e-128 462.2 295 79.7
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 3.8e-128 461.8 294 79.3
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 3.8e-128 461.8 294 79.3
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 3.8e-128 461.8 294 78.9
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 5.6e-127 458.0 295 76.9
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 1.6e-126 456.4 294 76.5
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.8e-126 455.7 294 78.2
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.6e-126 455.3 296 77.0
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.6e-126 455.3 296 77.0
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 6.1e-126 454.5 295 75.3
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 8.0e-126 454.1 294 76.9
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 8.0e-126 454.1 295 75.6
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 8.0e-126 454.1 294 77.9
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 1.4e-125 453.4 294 76.5
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 1.8e-125 453.0 294 78.9
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 3.0e-125 452.2 294 76.9
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 5.2e-125 451.4 294 76.2
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 5.2e-125 451.4 295 74.6
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 5.2e-125 451.4 302 76.8
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 6.8e-125 451.1 296 76.0
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 6.8e-125 451.1 296 77.4
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 1.2e-124 450.3 294 77.2
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.2e-124 450.3 295 75.3
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 2.0e-124 449.5 296 75.3
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 2.0e-124 449.5 302 76.5
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 3.4e-124 448.7 295 76.3
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.4e-124 448.7 294 77.2
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 3.4e-124 448.7 294 77.6
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 4.4e-124 448.4 295 73.9
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 5.7e-124 448.0 294 76.5
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 7.5e-124 447.6 294 76.9
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 7.5e-124 447.6 294 76.2
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 9.8e-124 447.2 294 76.2
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 9.8e-124 447.2 294 76.9
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.3e-123 446.8 294 77.2
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 1.7e-123 446.4 294 76.5
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 6.4e-123 444.5 295 75.6
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.1e-122 443.7 294 75.2
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.1e-122 443.7 313 71.2
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 1.4e-122 443.4 294 75.9
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 7.0e-122 441.0 313 70.6
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 7.0e-122 441.0 294 75.5
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 5.9e-121 438.0 293 74.4
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 7.8e-121 437.6 294 73.5
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.0e-120 437.2 294 73.8
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.7e-120 436.4 282 76.6
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.7e-120 436.4 294 73.8
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 2.3e-120 436.0 294 74.8
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 3.0e-120 435.6 294 76.5
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 3.9e-120 435.3 294 73.1
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.1e-119 433.7 313 70.3
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 1.1e-119 433.7 294 73.5
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 1.5e-119 433.3 338 66.9
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 4.3e-119 431.8 294 74.5
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 7.3e-119 431.0 295 73.6
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.6e-118 429.9 295 75.3
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 4.7e-118 428.3 296 72.0
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 1.0e-117 427.2 296 73.3
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.4e-117 426.8 296 72.6
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.4e-117 426.8 295 73.6
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.8e-117 426.4 296 73.6
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 2.3e-117 426.0 296 73.0
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 4.0e-117 425.2 293 72.4
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 6.8e-117 424.5 294 71.1
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 8.9e-117 424.1 289 72.3
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 1.5e-116 423.3 293 72.0
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 1.5e-116 423.3 294 70.7
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 1.5e-116 423.3 282 76.2
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 2.0e-116 422.9 296 72.3
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 2.0e-116 422.9 296 72.0
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 4.4e-116 421.8 296 70.9
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 9.8e-116 420.6 294 71.1
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.7e-115 419.9 294 72.4
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 2.2e-115 419.5 294 70.1
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 3.7e-115 418.7 296 71.6
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 3.7e-115 418.7 296 71.6
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 4.9e-115 418.3 296 70.3
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-114 417.2 295 69.5
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.1e-114 417.2 296 71.3
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.1e-114 415.2 295 69.2
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 4.1e-114 415.2 294 70.7
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 5.4e-114 414.8 294 71.4
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 1.6e-113 413.3 296 70.9
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 6.0e-113 411.4 295 70.2
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 6.0e-113 411.4 295 70.5
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 6.0e-113 411.4 276 74.6
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 7.8e-113 411.0 295 70.5
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 7.8e-113 411.0 293 70.6
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 3.0e-112 409.1 285 71.2
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 5.0e-112 408.3 282 71.6
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 4.3e-111 405.2 293 69.6
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 3.6e-110 402.1 296 69.9
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 2.0e-108 396.4 266 74.4
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.1e-106 390.6 251 78.1
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 1.1e-103 380.6 295 65.1
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 9.5e-103 377.5 295 68.5
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 7.1e-98 361.3 318 60.1
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 7.1e-98 361.3 217 82.5
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 7.3e-95 351.3 291 59.8
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 8.1e-94 347.8 223 78.5
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 7.1e-90 334.7 294 58.8
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 4.6e-89 332.0 294 59.5
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 3.0e-88 329.3 214 73.8
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.1e-86 323.2 294 57.1
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 3.6e-86 322.4 223 73.1
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 2.0e-84 316.6 223 70.4
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 2.6e-84 316.2 294 54.4
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 3.4e-84 315.8 290 55.9
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.5e-84 315.5 271 60.5
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 9.9e-84 314.3 295 57.3
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 1.3e-80 303.9 262 57.6
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 2.8e-78 296.2 219 66.2
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 3.4e-76 289.3 269 60.2
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 1.9e-71 273.5 256 55.9
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 6.5e-67 258.5 252 55.2
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 2.3e-64 250.0 177 71.8
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 3.1e-61 239.6 150 79.3
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 3.4e-60 236.1 177 63.8
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.9e-59 233.0 162 69.8
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.1e-53 212.6 202 56.9
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 6.5e-51 205.3 149 64.4
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 3.2e-50 203.0 143 64.3
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.0e-47 193.7 135 69.6
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 7.7e-44 181.8 182 56.6
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 9.4e-42 174.9 134 67.9
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 1.8e-40 170.6 266 35.7
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 2.9e-35 153.3 123 65.9
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.0e-32 144.8 304 33.9
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.3e-30 137.9 107 65.4
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-30 137.5 132 59.1
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 4.1e-29 132.9 100 61.0
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 9.8e-23 111.7 270 28.1
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 1.3e-22 111.3 66 84.8
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 9.1e-21 105.1 116 53.4
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.2e-20 104.8 81 63.0
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 1.0e-19 101.7 128 49.2
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 4.4e-15 86.3 96 54.2
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-13 81.6 96 52.1
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 7.8e-12 75.5 91 48.4
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 4.7e-09 66.2 60 58.3
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 6.8e-08 62.4 49 67.3
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.3e-06 58.2 54 53.7
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 2.9e-06 57.0 44 59.1


User provided reference genes

Program Settings