Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 1.2e-294 1015.8 510 100.0
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 1.2e-278 962.6 511 95.9
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 7.5e-257 890.2 460 97.0
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 9.6e-236 820.1 511 82.6
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 3.4e-233 811.6 511 82.6
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 4.2e-231 804.7 512 80.9
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 6.0e-230 800.8 510 81.4
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 2.5e-183 646.0 500 70.0
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 2.7e-169 599.4 470 64.3
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 5.0e-168 595.1 467 62.7
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 1.2e-166 590.5 490 61.2
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 2.1e-166 589.7 466 65.0
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 2.1e-166 589.7 469 63.5
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 2.8e-166 589.3 481 62.4
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.8e-165 586.6 467 63.8
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 2.2e-163 579.7 486 60.5
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 6.3e-163 578.2 477 61.6
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 2.4e-162 576.2 490 60.4
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 4.1e-162 575.5 469 61.8
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 7.0e-162 574.7 477 62.7
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 5.9e-161 571.6 464 62.3
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 2.3e-160 569.7 471 60.9
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 5.0e-160 568.5 465 61.5
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 5.6e-159 565.1 469 60.8
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 4.7e-158 562.0 389 70.2
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 6.1e-158 561.6 466 60.1
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 6.1e-158 561.6 472 60.4
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 8.0e-158 561.2 472 58.9
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 1.0e-157 560.8 466 60.1
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 2.3e-157 559.7 474 60.1
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.0e-157 558.9 476 59.9
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 6.8e-157 558.1 477 59.7
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 1.2e-156 557.4 465 60.9
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.2e-156 557.4 463 59.8
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.2e-156 557.4 463 59.6
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 5.7e-156 555.1 470 61.3
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 9.8e-156 554.3 473 59.6
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 1.3e-155 553.9 464 59.3
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 1.7e-155 553.5 457 62.6
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 2.9e-155 552.7 476 59.9
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 1.1e-154 550.8 451 59.0
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.1e-154 550.8 459 59.0
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 1.8e-154 550.1 476 60.5
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 4.1e-154 548.9 484 59.5
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 6.0e-153 545.0 448 60.3
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 1.0e-152 544.3 443 59.6
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.7e-152 543.5 466 60.3
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 1.7e-152 543.5 450 60.4
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 6.6e-152 541.6 461 58.6
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 1.9e-151 540.0 515 56.1
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 1.9e-151 540.0 458 59.0
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.3e-151 539.3 393 65.4
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.3e-151 538.9 393 65.4
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 7.3e-151 538.1 529 56.3
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 1.6e-150 537.0 465 58.5
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 1.1e-149 534.3 475 58.1
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.8e-149 533.5 471 57.1
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 2.3e-149 533.1 490 57.3
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 3.1e-149 532.7 460 60.2
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.5e-148 530.4 453 59.6
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 1.5e-148 530.4 473 57.9
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 1.5e-148 530.4 465 55.9
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 5.8e-148 528.5 492 55.5
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 9.8e-148 527.7 437 60.6
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 2.9e-147 526.2 455 59.3
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.7e-147 525.8 477 57.4
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 2.4e-146 523.1 456 59.4
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.4e-146 523.1 470 57.0
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 3.2e-146 522.7 475 56.6
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 2.7e-145 519.6 445 58.2
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 5.0e-144 515.4 483 54.5
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 3.3e-143 512.7 447 57.9
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 4.3e-143 512.3 458 58.3
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 8.1e-142 508.1 471 56.3
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 2.2e-139 500.0 486 56.6
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 1.1e-138 497.7 467 55.5
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.2e-137 494.2 466 57.3
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 1.2e-137 494.2 458 56.8
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 6.0e-137 491.9 355 67.6
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 7.8e-137 491.5 470 55.5
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 3.0e-136 489.6 453 58.1
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 1.2e-134 484.2 458 55.7
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 6.2e-134 481.9 470 55.5
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 1.4e-133 480.7 461 56.0
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 2.4e-133 479.9 451 56.3
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 5.2e-133 478.8 470 55.1
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 4.4e-132 475.7 450 56.9
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 1.3e-131 474.2 450 56.4
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 1.7e-131 473.8 451 55.9
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 7.1e-130 468.4 422 57.8
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 2.7e-129 466.5 450 56.0
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.3e-128 463.4 466 56.2
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 9.9e-124 448.0 332 65.7
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 6.6e-120 435.3 388 56.2
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 1.3e-115 421.0 474 48.1
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 8.4e-115 418.3 474 48.1
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 9.3e-114 414.8 473 48.0
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 8.7e-112 408.3 422 53.1
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 1.5e-111 407.5 335 60.3
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 5.5e-106 389.0 394 50.3
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 1.0e-104 384.8 414 49.0
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 3.3e-95 353.2 397 47.6
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 1.5e-87 327.8 323 55.4
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.2e-81 308.1 215 68.4
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 8.0e-73 278.9 373 41.3
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 7.2e-66 255.8 348 45.7
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 7.2e-66 255.8 207 67.1
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.2e-63 248.4 192 60.4
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.7e-59 234.6 230 56.1
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 2.5e-42 177.6 106 84.0
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 2.0e-39 167.9 310 33.9
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 9.2e-29 132.5 135 51.9
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.8e-24 118.2 154 47.4
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.1e-21 109.0 291 28.2
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 4.6e-20 103.6 289 26.0
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 2.8e-17 94.4 70 62.9
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 6.8e-16 89.7 204 28.9
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 6.8e-16 89.7 204 28.9
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.4e-13 82.0 166 38.6
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 1.6e-09 68.6 110 30.9
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 4.8e-09 67.0 281 24.2
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.1e-08 65.9 88 45.5
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 4.0e-08 63.9 154 27.3
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 5.3e-08 63.5 281 23.8
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.2e-07 62.4 129 27.1
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 2.0e-07 61.6 176 22.2
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 2.0e-07 61.6 176 22.2
EL10Ac2g03340 Beta vulgaris HOM05D005973 ORTHO05D007285 2.6e-07 61.2 88 34.1
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 3.4e-07 60.8 94 34.0
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 3.4e-07 60.8 129 27.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 4.4e-07 60.5 121 27.3
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 1.3e-06 58.9 172 26.7
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 2.2e-06 58.2 126 27.0
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 2.9e-06 57.8 214 25.7
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 3.8e-06 57.4 153 26.1
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 3.8e-06 57.4 153 26.1
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 4.9e-06 57.0 214 25.7
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 6.4e-06 56.6 167 24.0


User provided reference genes

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