Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 7.7e-173 610.5 341 100.0
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 1.4e-145 520.0 346 85.5
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.4e-142 510.0 346 83.8
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 3.2e-46 189.9 224 54.5
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 2.8e-42 176.8 429 39.9
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 1.4e-41 174.5 410 37.6
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.3e-36 157.1 402 36.8
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 4.1e-33 146.4 417 36.0
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.6e-32 144.4 417 35.7
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 2.1e-29 134.0 332 37.0
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 2.5e-22 110.5 447 30.6
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 7.3e-22 109.0 442 28.5
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 8.1e-21 105.5 249 35.3
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 8.1e-21 105.5 456 29.2
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 3.1e-20 103.6 444 28.6
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 8.9e-20 102.1 308 33.8
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 3.4e-19 100.1 372 30.6
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 7.5e-19 99.0 243 33.3
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 9.9e-19 98.6 461 26.7
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 9.9e-19 98.6 384 31.5
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.3e-18 98.2 454 29.5
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 4.9e-18 96.3 467 27.6
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 6.4e-18 95.9 450 28.0
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 8.3e-18 95.5 245 35.5
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 4.1e-17 93.2 186 40.3
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 5.4e-17 92.8 416 27.2
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 2.7e-16 90.5 367 29.2
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 6.0e-16 89.4 453 26.9
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 7.8e-16 89.0 464 29.3
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 7.8e-16 89.0 370 29.7
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.7e-15 87.8 389 30.3
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 2.3e-15 87.4 465 27.1
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 3.0e-15 87.0 422 28.4
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 3.9e-15 86.7 432 28.5
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 1.9e-14 84.3 217 36.9
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 1.9e-14 84.3 408 25.5
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 4.3e-14 83.2 397 27.5
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.1e-13 80.9 417 27.6
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 3.6e-13 80.1 393 30.3
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 6.2e-13 79.3 443 26.6
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 8.1e-13 79.0 446 25.8
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 1.1e-12 78.6 413 25.7
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.4e-12 78.2 195 34.4
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.4e-12 78.2 450 26.9
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.3e-12 77.4 419 26.5
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 2.3e-12 77.4 195 33.8
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 8.9e-12 75.5 345 27.8
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 1.2e-11 75.1 196 34.7
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 1.2e-11 75.1 378 27.0
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 2.0e-11 74.3 327 28.4
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 2.0e-11 74.3 357 28.9
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 5.8e-11 72.8 424 25.9
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 5.8e-11 72.8 398 27.1
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 5.8e-11 72.8 198 32.8
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 7.6e-11 72.4 338 28.7
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 9.9e-11 72.0 386 27.2
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 9.9e-11 72.0 356 25.8
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.3e-10 71.6 423 26.0
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.2e-10 70.9 443 26.6
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.2e-10 70.9 342 29.5
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 2.2e-10 70.9 343 28.0
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 2.2e-10 70.9 370 29.5
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.9e-10 70.5 357 26.6
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 3.8e-10 70.1 399 25.1
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 3.8e-10 70.1 397 25.9
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 3.8e-10 70.1 355 26.8
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 4.9e-10 69.7 401 27.9
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 4.9e-10 69.7 164 35.4
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 4.9e-10 69.7 131 38.9
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 8.4e-10 68.9 193 32.6
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 1.1e-09 68.6 341 29.3
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 1.1e-09 68.6 198 37.9
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-09 68.2 396 27.5
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.9e-09 67.8 425 27.1
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 1.9e-09 67.8 341 28.4
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.9e-09 67.8 398 27.4
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 2.4e-09 67.4 167 34.7
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 3.2e-09 67.0 395 27.6
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 4.1e-09 66.6 413 25.7
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 4.1e-09 66.6 418 27.8
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 5.4e-09 66.2 360 25.8
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 7.1e-09 65.9 377 27.6
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 7.1e-09 65.9 360 26.1
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 7.1e-09 65.9 418 24.4
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 7.1e-09 65.9 377 27.6
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 7.1e-09 65.9 418 24.4
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 7.1e-09 65.9 387 27.6
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 7.1e-09 65.9 360 26.1
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 7.1e-09 65.9 351 27.9
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 7.1e-09 65.9 396 27.5
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 7.1e-09 65.9 384 27.9
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 7.1e-09 65.9 389 25.4
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 9.2e-09 65.5 211 33.2
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.2e-08 65.1 343 30.3
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 1.2e-08 65.1 387 27.6
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.2e-08 65.1 428 25.9
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 1.2e-08 65.1 429 25.6
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 1.2e-08 65.1 373 24.7
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 1.6e-08 64.7 292 26.0
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 2.1e-08 64.3 442 24.9
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.7e-08 63.9 413 25.9
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.7e-08 63.9 348 28.4
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 3.5e-08 63.5 403 25.3
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 3.5e-08 63.5 430 24.9
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.5e-08 63.5 432 25.9
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 4.6e-08 63.2 189 29.1
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 6.0e-08 62.8 402 25.1
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 7.8e-08 62.4 418 25.4
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.0e-07 62.0 424 25.9
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 1.0e-07 62.0 379 25.9
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-07 61.6 293 28.0
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 2.3e-07 60.8 340 27.6
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 2.3e-07 60.8 431 23.9
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.3e-07 60.8 212 32.1
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 2.3e-07 60.8 352 27.0
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 3.0e-07 60.5 424 24.8
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 3.0e-07 60.5 378 26.5
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 3.9e-07 60.1 339 27.7
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 3.9e-07 60.1 339 27.7
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 5.1e-07 59.7 190 33.2
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 8.6e-07 58.9 340 25.3
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 8.6e-07 58.9 413 25.9
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 1.1e-06 58.5 334 27.8
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.9e-06 57.8 334 25.7
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 3.3e-06 57.0 330 26.1
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 3.3e-06 57.0 233 26.6
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 4.3e-06 56.6 341 27.0
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 4.3e-06 56.6 330 26.1
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 4.3e-06 56.6 411 22.9
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.3e-06 56.6 419 25.8
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 4.3e-06 56.6 68 44.1
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 5.6e-06 56.2 334 25.4
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 7.3e-06 55.8 193 29.0
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 9.6e-06 55.5 328 24.7
DCAR_000175 Daucus carota HOM05D033909 ORTHO05D005159 9.6e-06 55.5 324 25.0
DCAR_000842 Daucus carota HOM05D033909 ORTHO05D005159 9.6e-06 55.5 324 25.0


User provided reference genes

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