Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021096 Solanum tuberosum HOM05D007839 ORTHO05D009924 2.0e-86 322.4 160 100.0
Sopen02g019500 Solanum pennellii HOM05D007839 ORTHO05D009924 1.1e-52 210.3 131 78.6
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 6.9e-39 164.5 128 67.2
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 2.7e-35 152.5 126 63.5
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 1.3e-34 150.2 126 62.7
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 1.7e-34 149.8 126 60.3
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 2.5e-33 146.0 125 57.6
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 3.3e-33 145.6 127 58.3
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 5.6e-33 144.8 126 58.7
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 1.3e-32 143.7 125 55.2
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 3.6e-32 142.1 126 58.7
Aa31LG10G6870 Aethionema arabicum HOM05D007839 ORTHO05D009924 1.8e-31 139.8 134 54.5
RcHm_v2.0_Chr5g0014111 Rosa chinensis HOM05D007839 ORTHO05D009924 2.4e-31 139.4 127 59.8
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.2e-30 137.1 126 58.7
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 1.5e-30 136.7 126 57.1
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 1.5e-30 136.7 126 57.1
AL4G30500 Arabidopsis lyrata HOM05D007839 ORTHO05D009924 2.6e-30 136.0 134 53.7
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 2.6e-30 136.0 123 56.1
AT2G34530 Arabidopsis thaliana HOM05D007839 ORTHO05D009924 4.5e-30 135.2 134 53.0
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 4.5e-30 135.2 134 53.7
BolC4t27853H Brassica oleracea HOM05D007839 ORTHO05D009924 9.9e-30 134.0 126 54.8
Prupe.4G080500 Prunus persica HOM05D007839 ORTHO05D009924 9.9e-30 134.0 134 53.0
Sabra11G0067200 Salix brachista HOM05D007839 ORTHO05D009924 9.9e-30 134.0 126 53.2
THA.LOC104814297 Tarenaya hassleriana HOM05D007839 ORTHO05D009924 2.2e-29 132.9 126 52.4
Sp4g16790 Schrenkiella parvula HOM05D007839 ORTHO05D009924 2.9e-29 132.5 134 52.2
C04p63860 Brassica napus HOM05D007839 ORTHO05D009924 3.8e-29 132.1 126 54.0
BraA04t18149Z Brassica rapa HOM05D007839 ORTHO05D009924 3.8e-29 132.1 126 54.0
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 3.8e-29 132.1 127 56.7
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 3.8e-29 132.1 126 53.2
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 3.8e-29 132.1 127 54.3
BcaB02g09533 Brassica carinata HOM05D007839 ORTHO05D009924 4.9e-29 131.7 126 53.2
BcaC02g11515 Brassica carinata HOM05D007839 ORTHO05D009924 4.9e-29 131.7 126 53.2
A05p11150 Brassica napus HOM05D007839 ORTHO05D009924 4.9e-29 131.7 126 54.0
C04p14500 Brassica napus HOM05D007839 ORTHO05D009924 4.9e-29 131.7 126 53.2
BolC4t23033H Brassica oleracea HOM05D007839 ORTHO05D009924 4.9e-29 131.7 126 53.2
BraA05t20061Z Brassica rapa HOM05D007839 ORTHO05D009924 4.9e-29 131.7 126 54.0
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 8.4e-29 131.0 127 55.1
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 8.4e-29 131.0 126 52.4
CANSAT35G0562 Cannabis sativa HOM05D007839 ORTHO05D009924 1.1e-28 130.6 124 50.0
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.1e-28 130.6 126 55.6
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 1.4e-28 130.2 126 55.6
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 4.2e-28 128.6 127 56.7
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 7.1e-28 127.9 127 56.7
arahy.Tifrunner.gnm1.ann1.EDFF2E Arachis hypogaea HOM05D007839 ORTHO05D009924 4.6e-27 125.2 126 51.6
GSVIVG01021458001 Vitis vinifera HOM05D007839 ORTHO05D009924 1.8e-26 123.2 126 52.4
Sabra04G0043100 Salix brachista HOM05D007839 ORTHO05D009924 3.0e-26 122.5 126 51.6
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 5.1e-26 121.7 126 50.8
BcaB06g28780 Brassica carinata HOM05D007839 ORTHO05D009924 6.7e-26 121.3 124 52.4
Haze_05595 Corylus avellana HOM05D007839 ORTHO05D009924 6.7e-26 121.3 126 50.0
Duzib235G0881 Durio zibethinus HOM05D007839 ORTHO05D009924 1.5e-25 120.2 127 49.6
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 5.6e-25 118.2 125 49.6
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 7.4e-25 117.9 124 47.6
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 7.4e-25 117.9 124 51.6
Gohir.D06G142600 Gossypium hirsutum HOM05D007839 ORTHO05D009924 9.6e-25 117.5 127 48.8
Gohir.A06G137400 Gossypium hirsutum HOM05D007839 ORTHO05D009924 3.7e-24 115.5 127 48.0
Gorai.010G166400 Gossypium raimondii HOM05D007839 ORTHO05D009924 3.7e-24 115.5 127 48.0
Thhalv10017730m.g Eutrema salsugineum HOM05D007839 ORTHO05D009924 1.1e-23 114.0 117 51.3
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 6.9e-23 111.3 129 45.0
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 1.2e-22 110.5 126 45.2
TPR.G11372 Trifolium pratense HOM05D007839 ORTHO05D009924 1.3e-21 107.1 122 50.8
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 3.8e-21 105.5 126 43.7
GSVIVG01021451001 Vitis vinifera HOM05D007839 ORTHO05D009924 9.3e-20 100.9 131 45.0
CsaV3_6G051740 Cucumis sativus L. HOM05D007839 ORTHO05D009924 1.6e-19 100.1 132 39.4
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 1.6e-19 100.1 122 46.7
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 2.3e-18 96.3 125 41.6
Carub.0004s1620 Capsella rubella HOM05D007839 ORTHO05D009924 3.0e-18 95.9 99 52.5
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 1.4e-15 87.0 136 41.2
CANSAT35G0336 Cannabis sativa HOM05D007839 ORTHO05D009924 1.5e-14 83.6 124 42.7
Phvul.006G164900 Phaseolus vulgaris HOM05D007839 ORTHO05D009924 1.5e-14 83.6 138 42.0
Gorai.010G238500 Gossypium raimondii HOM05D007839 ORTHO05D009924 2.9e-13 79.3 128 37.5
arahy.Tifrunner.gnm1.ann1.9V8GBM Arachis hypogaea HOM05D007839 ORTHO05D009924 1.9e-12 76.6 107 43.9
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 1.9e-12 76.6 84 53.6
A04p26450 Brassica napus HOM05D007839 ORTHO05D009924 2.5e-12 76.3 67 59.7
ATR1091G011 Amborella trichopoda HOM05D007839 ORTHO05D009924 1.3e-10 70.5 100 41.0
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.3e-10 69.7 69 56.5
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 2.5e-09 66.2 102 40.2
Gohir.D06G204450 Gossypium hirsutum HOM05D007839 ORTHO05D009924 2.5e-09 66.2 118 36.4
ATR1091G017 Amborella trichopoda HOM05D007839 ORTHO05D009924 3.3e-09 65.9 148 33.8
Haze_05600 Corylus avellana HOM05D007839 ORTHO05D009924 1.6e-08 63.5 184 28.8
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 2.8e-08 62.8 121 40.5
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 2.4e-07 59.7 119 36.1
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 4.1e-07 58.9 122 40.2
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 1.2e-06 57.4 118 32.2
ATR1091G114 Amborella trichopoda HOM05D007839 ORTHO05D009924 2.0e-06 56.6 104 35.6
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 2.6e-06 56.2 119 35.3
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 4.5e-06 55.5 66 50.0
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 1.0e-05 54.3 118 34.7


User provided reference genes

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