Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 6.9e-142 507.3 256 100.0
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.1e-139 500.0 256 98.8
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.6e-135 486.1 256 96.1
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 3.7e-135 485.0 256 96.1
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 3.6e-130 468.4 255 92.2
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.5e-128 463.0 256 91.8
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 2.9e-124 448.7 255 89.8
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.3e-84 317.0 260 63.1
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.1e-83 313.9 258 62.4
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 4.3e-83 312.0 257 61.5
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.6e-82 310.1 256 60.5
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 3.4e-80 302.4 255 62.7
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 4.4e-80 302.0 255 62.0
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 4.4e-80 302.0 261 57.5
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.8e-80 301.6 257 58.8
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.7e-79 300.1 258 59.7
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.7e-79 298.9 258 58.1
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-78 297.4 257 58.0
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 2.4e-78 296.2 257 58.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.2e-78 295.8 258 54.3
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 9.2e-78 294.3 257 58.4
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.6e-77 293.5 259 57.9
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 2.0e-77 293.1 258 54.3
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 4.6e-77 292.0 258 57.8
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.0e-76 290.8 258 54.3
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.3e-76 290.4 259 56.8
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.3e-76 290.4 258 53.5
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.7e-76 290.0 259 59.1
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 3.0e-76 289.3 257 58.4
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.5e-75 287.0 258 57.8
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 7.3e-75 284.6 258 56.2
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 7.3e-75 284.6 256 58.2
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 7.3e-75 284.6 258 57.8
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 2.1e-74 283.1 258 58.5
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 2.8e-74 282.7 258 58.5
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 3.6e-74 282.3 259 56.0
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 3.6e-74 282.3 258 53.9
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 8.0e-74 281.2 258 56.2
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-73 280.8 257 55.3
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.4e-73 280.4 258 55.8
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.8e-73 280.0 256 54.3
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.3e-73 279.6 257 54.9
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.5e-72 276.9 256 54.7
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 3.4e-72 275.8 256 52.7
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 4.4e-72 275.4 260 54.6
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 4.4e-72 275.4 262 55.0
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 9.8e-72 274.2 259 56.4
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.7e-71 273.5 257 54.1
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 2.2e-71 273.1 259 52.9
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.9e-71 271.9 258 54.7
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 8.3e-71 271.2 259 54.4
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 1.1e-70 270.8 262 53.1
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.4e-70 269.6 258 51.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 3.2e-70 269.2 237 58.6
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 4.1e-70 268.9 304 49.3
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 5.4e-70 268.5 258 57.8
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 7.0e-70 268.1 258 56.2
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.1e-69 266.5 259 54.4
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 7.8e-69 264.6 259 53.3
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.7e-68 263.5 258 52.3
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 3.0e-68 262.7 259 54.1
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 3.9e-68 262.3 276 54.3
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.9e-67 260.0 258 50.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 3.3e-67 259.2 259 51.4
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 3.3e-67 259.2 258 51.6
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 7.3e-67 258.1 257 52.5
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.6e-66 256.9 258 50.8
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 8.1e-66 254.6 255 50.6
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.4e-65 253.8 255 51.0
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 2.3e-65 253.1 232 58.6
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 3.1e-65 252.7 259 53.3
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 5.2e-65 251.9 258 51.6
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 6.8e-65 251.5 232 58.6
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 4.4e-64 248.8 251 51.0
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 5.8e-64 248.4 257 51.0
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 9.9e-64 247.7 258 51.9
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.3e-63 247.3 227 51.5
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.7e-63 246.9 258 51.6
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 3.7e-63 245.7 260 50.0
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 3.7e-63 245.7 258 49.6
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.9e-63 245.4 241 55.2
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 4.9e-63 245.4 321 45.2
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 4.9e-63 245.4 227 58.1
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 8.3e-63 244.6 257 49.8
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 8.3e-63 244.6 257 49.8
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 8.3e-63 244.6 257 49.8
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.4e-62 243.0 256 49.2
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 4.1e-62 242.3 259 49.0
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 4.1e-62 242.3 257 50.6
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 7.1e-62 241.5 258 50.8
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 7.1e-62 241.5 257 49.4
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 9.2e-62 241.1 229 53.7
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 9.2e-62 241.1 257 49.8
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 9.2e-62 241.1 257 49.8
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.6e-61 240.4 257 51.0
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.6e-61 240.4 258 50.8
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.5e-61 239.2 256 50.4
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 3.5e-61 239.2 257 51.0
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 3.5e-61 239.2 259 50.6
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 3.5e-61 239.2 257 51.0
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 4.6e-61 238.8 259 50.6
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 4.6e-61 238.8 259 50.6
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 4.6e-61 238.8 259 50.6
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.6e-61 238.8 257 48.2
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 6.0e-61 238.4 257 49.0
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 6.0e-61 238.4 257 50.2
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-60 237.3 257 50.6
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.3e-60 236.5 265 50.6
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.9e-60 235.7 257 48.6
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.9e-60 235.7 257 47.5
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 5.1e-60 235.3 256 48.8
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 5.1e-60 235.3 229 52.0
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.6e-60 234.6 257 48.6
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 8.6e-60 234.6 257 49.0
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 8.6e-60 234.6 257 50.6
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.1e-59 234.2 257 49.0
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.5e-59 233.0 260 48.5
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 3.3e-59 232.6 257 50.2
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 3.3e-59 232.6 258 47.3
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.3e-59 232.6 257 48.2
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 9.5e-59 231.1 253 49.0
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.8e-58 229.6 229 52.0
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 4.7e-58 228.8 258 47.7
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 9.9e-56 221.1 256 46.9
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 9.9e-56 221.1 255 46.7
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.2e-55 219.9 258 46.9
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.2e-55 219.9 259 46.3
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.9e-55 219.5 258 45.3
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 6.4e-55 218.4 258 46.1
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 1.1e-54 217.6 260 45.4
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.2e-54 216.1 258 45.7
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.2e-53 214.2 207 55.1
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.9e-51 206.8 259 44.0
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.6e-50 203.8 263 43.3
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.3e-47 194.1 104 93.3
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.6e-45 187.2 219 45.7
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 2.3e-44 183.3 256 42.2
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 8.4e-39 164.9 215 43.7
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.6e-37 160.6 225 38.7
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.0e-36 157.9 165 48.5
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 4.3e-35 152.5 232 37.1
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 3.7e-34 149.4 171 47.4
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.8e-33 147.1 231 34.6
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 9.0e-33 144.8 181 40.9
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 2.5e-30 136.7 245 33.9
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 3.1e-25 119.8 241 35.7
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.6e-21 107.5 118 50.0
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.7e-21 106.7 122 48.4
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 7.9e-21 105.1 122 47.5
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.1e-17 92.8 88 52.3
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 6.9e-09 65.5 83 36.1
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.4e-06 57.8 56 42.9
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 4.2e-06 56.2 51 45.1
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 4.2e-06 56.2 51 45.1


User provided reference genes

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