Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020989 Solanum tuberosum HOM05D002861 ORTHO05D003104 3.5e-194 681.4 337 100.0
PGSC0003DMG400045282 Solanum tuberosum HOM05D002861 ORTHO05D003104 2.7e-61 240.0 209 65.6
Peaxi162Scf01399g00018 Petunia axillaris HOM05D002861 ORTHO05D003104 6.7e-52 208.8 551 31.9
Nitab4.5_0003575g0040 Nicotiana tabacum HOM05D002861 ORTHO05D003104 2.7e-45 186.8 206 50.5
PGSC0003DMG400047079 Solanum tuberosum HOM05D002861 ORTHO05D003104 5.3e-41 172.6 141 68.1
PGSC0003DMG400005316 Solanum tuberosum HOM05D002861 ORTHO05D003104 5.0e-39 166.0 241 41.1
Solyc04g050920.3 Solanum lycopersicum HOM05D002861 ORTHO05D003104 1.4e-38 164.5 243 40.3
Sopen04g022040 Solanum pennellii HOM05D002861 ORTHO05D003104 1.2e-37 161.4 243 39.9
Oeu007688.1 Olea europaea HOM05D002861 ORTHO05D003104 5.3e-33 146.0 243 34.2
PGSC0003DMG402010686 Solanum tuberosum HOM05D002861 ORTHO05D003104 9.1e-33 145.2 327 31.5
Migut.F01820 Erythranthe guttata HOM05D002861 ORTHO05D003104 2.9e-31 140.2 238 35.3
GSVIVG01026376001 Vitis vinifera HOM05D002861 ORTHO05D003104 3.8e-31 139.8 242 33.9
Hma1.2p1_0123F.1_g057920 Hydrangea macrophylla HOM05D002861 ORTHO05D003104 5.0e-31 139.4 242 31.8
Manes.09G144800 Manihot esculenta HOM05D002861 ORTHO05D003104 1.9e-30 137.5 242 35.1
Eucgr.B02174 Eucalyptus grandis HOM05D002861 ORTHO05D003104 2.5e-30 137.1 251 33.5
Cc09_g03190 Coffea canephora HOM05D002861 ORTHO05D003104 4.2e-30 136.3 241 33.6
Hma1.2p1_0123F.1_g057930 Hydrangea macrophylla HOM05D002861 ORTHO05D003104 3.6e-29 133.3 244 31.1
Eucgr.B02175 Eucalyptus grandis HOM05D002861 ORTHO05D003104 4.7e-29 132.9 250 32.8
Actinidia38916 Actinidia chinensis HOM05D002861 ORTHO05D003104 1.8e-28 131.0 236 32.2
TAR633G0661 Trochodendron aralioides HOM05D002861 ORTHO05D003104 1.8e-28 131.0 245 31.4
TAR633G1221 Trochodendron aralioides HOM05D002861 ORTHO05D003104 5.1e-28 129.4 242 31.0
Potri.019G029800 Populus trichocarpa HOM05D002861 ORTHO05D003104 2.0e-27 127.5 242 30.2
Potri.019G030300 Populus trichocarpa HOM05D002861 ORTHO05D003104 2.6e-27 127.1 242 31.0
Nitab4.5_0003575g0010 Nicotiana tabacum HOM05D002861 ORTHO05D003104 1.3e-26 124.8 208 38.5
TWI60G1199 Tripterygium wilfordii HOM05D002861 ORTHO05D003104 1.3e-26 124.8 242 30.2
COL.COLO4_20548 Corchorus olitorius HOM05D002861 ORTHO05D003104 1.7e-26 124.4 240 31.7
TWI34G0682 Tripterygium wilfordii HOM05D002861 ORTHO05D003104 1.7e-26 124.4 244 31.1
TWI34G1363 Tripterygium wilfordii HOM05D002861 ORTHO05D003104 2.2e-26 124.0 242 29.8
QL04p087697 Quercus lobata HOM05D002861 ORTHO05D003104 2.8e-26 123.6 250 30.4
Potri.019G029900 Populus trichocarpa HOM05D002861 ORTHO05D003104 4.8e-26 122.9 243 30.9
TWI34G1014 Tripterygium wilfordii HOM05D002861 ORTHO05D003104 4.8e-26 122.9 244 30.3
Thecc.05G260700 Theobroma cacao HOM05D002861 ORTHO05D003104 8.2e-26 122.1 238 31.1
Ciclev10020477m.g Citrus clementina HOM05D002861 ORTHO05D003104 2.4e-25 120.6 242 33.5
QL04p087457 Quercus lobata HOM05D002861 ORTHO05D003104 2.4e-25 120.6 237 29.1
PGR142G3755 Punica granatum HOM05D002861 ORTHO05D003104 3.1e-25 120.2 243 32.9
ClCG11G010120 Citrullus lanatus HOM05D002861 ORTHO05D003104 4.1e-25 119.8 241 32.4
QL03p068890 Quercus lobata HOM05D002861 ORTHO05D003104 5.3e-25 119.4 225 30.7
Eucgr.B02176 Eucalyptus grandis HOM05D002861 ORTHO05D003104 2.6e-24 117.1 241 29.0
Potri.019G030200 Populus trichocarpa HOM05D002861 ORTHO05D003104 2.6e-24 117.1 243 29.6
Cpa.g.sc51.68 Carica papaya HOM05D002861 ORTHO05D003104 3.5e-24 116.7 242 28.5
Gohir.A11G241200 Gossypium hirsutum HOM05D002861 ORTHO05D003104 1.3e-23 114.8 241 30.3
Sabra19G0037000 Salix brachista HOM05D002861 ORTHO05D003104 1.3e-23 114.8 242 30.2
Sabra19G0036700 Salix brachista HOM05D002861 ORTHO05D003104 1.7e-23 114.4 237 29.5
Gohir.D11G250600 Gossypium hirsutum HOM05D002861 ORTHO05D003104 2.2e-23 114.0 241 31.1
Gorai.007G268700 Gossypium raimondii HOM05D002861 ORTHO05D003104 2.2e-23 114.0 241 31.1
Nitab4.5_0000344g0020 Nicotiana tabacum HOM05D002861 ORTHO05D003104 2.2e-23 114.0 193 36.8
Solyc04g050910.1 Solanum lycopersicum HOM05D002861 ORTHO05D003104 2.2e-23 114.0 64 84.4
Eucgr.B02178 Eucalyptus grandis HOM05D002861 ORTHO05D003104 2.9e-23 113.6 281 27.4
Prupe.6G355800 Prunus persica HOM05D002861 ORTHO05D003104 2.9e-23 113.6 242 28.9
Duzib177G0372 Durio zibethinus HOM05D002861 ORTHO05D003104 8.5e-23 112.1 174 35.1
PGR031G2463 Punica granatum HOM05D002861 ORTHO05D003104 3.2e-22 110.2 216 32.9
Sabra19G0036900 Salix brachista HOM05D002861 ORTHO05D003104 4.2e-22 109.8 141 39.7
Sabra19G0037100 Salix brachista HOM05D002861 ORTHO05D003104 5.5e-22 109.4 263 27.8
Sabra19G0039600 Salix brachista HOM05D002861 ORTHO05D003104 5.5e-22 109.4 263 27.8
Sabra19G0036800 Salix brachista HOM05D002861 ORTHO05D003104 7.2e-22 109.0 242 28.1
Eucgr.B02177 Eucalyptus grandis HOM05D002861 ORTHO05D003104 9.4e-22 108.6 241 27.4
Sed0011787 Sechium edule HOM05D002861 ORTHO05D003104 9.4e-22 108.6 241 30.3
Sed0017655 Sechium edule HOM05D002861 ORTHO05D003104 9.4e-22 108.6 241 30.3
RcHm_v2.0_Chr3g0448691 Rosa chinensis HOM05D002861 ORTHO05D003104 2.1e-21 107.5 269 27.1
Hund07150 Selenicereus undatus HOM05D002861 ORTHO05D003104 2.1e-21 107.5 336 25.3
Atru.chr2.1237 Acer truncatum HOM05D002861 ORTHO05D003104 2.7e-21 107.1 244 28.3
Sabra19G0036400 Salix brachista HOM05D002861 ORTHO05D003104 4.7e-21 106.3 254 25.2
Atru.chr2.955 Acer truncatum HOM05D002861 ORTHO05D003104 6.1e-21 105.9 235 28.5
CAN.G1476.8 Capsicum annuum HOM05D000001 ORTHO05D115516 8.0e-21 105.5 120 52.5
CAN.G1476.9 Capsicum annuum HOM05D017506 ORTHO05D022179 8.0e-21 105.5 120 52.5
MD12G1254900 Malus domestica HOM05D002861 ORTHO05D003104 8.0e-21 105.5 253 26.1
Peaxi162Scf01399g00019 Petunia axillaris HOM05D002861 ORTHO05D003104 1.4e-20 104.8 215 38.1
TWI60G0586 Tripterygium wilfordii HOM05D002861 ORTHO05D003104 2.3e-20 104.0 245 29.4
Nn1g07961 Nelumbo nucifera HOM05D002861 ORTHO05D003104 3.0e-20 103.6 239 28.0
RcHm_v2.0_Chr3g0448711 Rosa chinensis HOM05D002861 ORTHO05D003104 5.2e-20 102.8 267 26.2
Ciclev10023583m.g Citrus clementina HOM05D002861 ORTHO05D003104 6.7e-20 102.4 243 30.5
Atru.chr2.1241 Acer truncatum HOM05D002861 ORTHO05D003104 4.4e-19 99.8 240 27.9
Haze_04504 Corylus avellana HOM05D002861 ORTHO05D003104 4.4e-19 99.8 116 38.8
MD12G1254500 Malus domestica HOM05D002861 ORTHO05D003104 1.3e-18 98.2 266 25.2
FvH4_6g01160 Fragaria vesca HOM05D002861 ORTHO05D003104 1.7e-18 97.8 267 27.7
FAN14G1630 Fragaria x ananassa HOM05D002861 ORTHO05D003104 1.7e-18 97.8 548 21.9
Ciclev10024529m.g Citrus clementina HOM05D002861 ORTHO05D003104 2.8e-18 97.1 241 31.5
PGR031G2797 Punica granatum HOM05D002861 ORTHO05D003104 2.8e-18 97.1 238 31.1
QL04p087826 Quercus lobata HOM05D002861 ORTHO05D003104 2.8e-18 97.1 111 38.7
Sabra19G0036500 Salix brachista HOM05D002861 ORTHO05D003104 2.8e-18 97.1 242 26.0
Sabra19G0039500 Salix brachista HOM05D002861 ORTHO05D003104 2.8e-18 97.1 336 24.1
Ciclev10020557m.g Citrus clementina HOM05D002861 ORTHO05D003104 6.3e-18 95.9 241 30.7
THA.LOC104826015 Tarenaya hassleriana HOM05D002861 ORTHO05D003104 6.3e-18 95.9 230 29.6
Ciclev10020658m.g Citrus clementina HOM05D002861 ORTHO05D003104 1.1e-17 95.1 229 29.7
Solyc04g050890.1 Solanum lycopersicum HOM05D002861 ORTHO05D003104 1.1e-17 95.1 66 72.7
THA.LOC104826017 Tarenaya hassleriana HOM05D002861 ORTHO05D003104 1.8e-17 94.4 239 26.8
MD12G1254800 Malus domestica HOM05D002861 ORTHO05D003104 4.1e-17 93.2 241 25.3
MELO3C008673.2 Cucumis melo HOM05D002861 ORTHO05D003104 7.0e-17 92.4 241 26.6
MD12G1254700 Malus domestica HOM05D002861 ORTHO05D003104 7.0e-17 92.4 228 26.3
Peaxi162Scf01011g00211 Petunia axillaris HOM05D002861 ORTHO05D003104 1.6e-16 91.3 152 40.8
Ciclev10020321m.g Citrus clementina HOM05D002861 ORTHO05D003104 3.5e-16 90.1 241 29.9
Haze_04500 Corylus avellana HOM05D002861 ORTHO05D003104 3.5e-16 90.1 116 38.8
AUR62005296 Chenopodium quinoa HOM05D002861 ORTHO05D003104 4.5e-16 89.7 225 24.4
PGSC0003DMG401010686 Solanum tuberosum HOM05D002861 ORTHO05D003104 4.5e-16 89.7 103 43.7
MD12G1254000 Malus domestica HOM05D002861 ORTHO05D003104 5.9e-16 89.4 242 26.4
THA.LOC104826016 Tarenaya hassleriana HOM05D002861 ORTHO05D003104 5.9e-16 89.4 240 26.7
Ciclev10020909m.g Citrus clementina HOM05D002861 ORTHO05D003104 1.0e-15 88.6 225 30.7
CsaV3_2G010200 Cucumis sativus L. HOM05D002861 ORTHO05D003104 1.0e-15 88.6 241 26.6
MD12G1254400 Malus domestica HOM05D002861 ORTHO05D003104 1.0e-15 88.6 242 24.0
THA.LOC104827370 Tarenaya hassleriana HOM05D002861 ORTHO05D003104 1.0e-15 88.6 107 39.3
FAN09G2703 Fragaria x ananassa HOM05D002861 ORTHO05D003104 2.2e-15 87.4 187 29.4
Sabra19G0036600 Salix brachista HOM05D002861 ORTHO05D003104 2.9e-15 87.0 282 22.3
Sopen09g026040 Solanum pennellii HOM05D000049 ORTHO05D000027 5.0e-15 86.3 50 86.0
EL10Ac4g09800 Beta vulgaris HOM05D002861 ORTHO05D003104 6.5e-15 85.9 231 29.4
MD12G1254300 Malus domestica HOM05D002861 ORTHO05D003104 1.1e-14 85.1 176 27.3
PGSC0003DMG400020990 Solanum tuberosum HOM05D002861 ORTHO05D003104 1.1e-14 85.1 58 67.2
MBI11_g07443_MAGBIO Magnolia biondii HOM05D002861 ORTHO05D003104 1.5e-14 84.7 299 26.1
Nitab4.5_0000344g0010 Nicotiana tabacum HOM05D002861 ORTHO05D003104 1.9e-14 84.3 64 67.2
arahy.Tifrunner.gnm1.ann1.7LN8RE Arachis hypogaea HOM05D002861 ORTHO05D003104 2.5e-14 84.0 231 29.0
Nitab4.5_0012098g0020 Nicotiana tabacum HOM05D002861 ORTHO05D003104 2.5e-14 84.0 77 61.0
CANSAT54G0345 Cannabis sativa HOM05D002861 ORTHO05D003104 3.2e-14 83.6 242 26.4
AL5G35360 Arabidopsis lyrata HOM05D002861 ORTHO05D003104 4.2e-14 83.2 165 27.3
Sopen01g016480 Solanum pennellii HOM05D001580 ORTHO05D007970 4.2e-14 83.2 63 65.1
FAN05G3792 Fragaria x ananassa HOM05D002861 ORTHO05D003104 7.2e-14 82.4 240 26.2
arahy.Tifrunner.gnm1.ann1.J7NADL Arachis hypogaea HOM05D002861 ORTHO05D003104 9.4e-14 82.0 231 28.6
MBI06_g25711_MAGBIO Magnolia biondii HOM05D002861 ORTHO05D003104 1.2e-13 81.6 146 32.2
Ciclev10023351m.g Citrus clementina HOM05D002861 ORTHO05D003104 1.6e-13 81.3 213 29.1
FAN02G4407 Fragaria x ananassa HOM05D002861 ORTHO05D003104 2.1e-13 80.9 242 24.8
MD04G1235900 Malus domestica HOM05D002861 ORTHO05D003104 2.1e-13 80.9 234 24.8
Thhalv10010949m.g Eutrema salsugineum HOM05D002861 ORTHO05D003104 2.7e-13 80.5 214 23.8
Sopen11g001500 Solanum pennellii HOM05D001580 ORTHO05D001517 3.6e-13 80.1 47 78.7
MD12G1253900 Malus domestica HOM05D002861 ORTHO05D003104 4.7e-13 79.7 114 38.6
PGSC0003DMG402010692 Solanum tuberosum HOM05D002861 ORTHO05D003104 6.1e-13 79.3 65 64.6
FAN05G1070 Fragaria x ananassa HOM05D002861 ORTHO05D003104 8.0e-13 79.0 240 25.8
PSO063G4438 Papaver somniferum HOM05D002861 ORTHO05D003104 1.4e-12 78.2 239 26.8
PGSC0003DMG400005315 Solanum tuberosum HOM05D002861 ORTHO05D003104 1.4e-12 78.2 102 50.0
PGSC0003DMG400018792 Solanum tuberosum HOM05D002381 ORTHO05D002480 4.0e-12 76.6 58 70.7
Peaxi162Scf01011g00213 Petunia axillaris HOM05D002861 ORTHO05D003104 5.2e-12 76.3 83 51.8
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 5.2e-12 76.3 39 94.9
ClCG11G010150 Citrullus lanatus HOM05D002861 ORTHO05D003104 1.2e-11 75.1 202 26.7
PGSC0003DMG400026074 Solanum tuberosum HOM05D004866 ORTHO05D005716 3.4e-11 73.6 38 89.5
Carub.0005s2090 Capsella rubella HOM05D002861 ORTHO05D003104 9.8e-11 72.0 237 21.9
FvH4_6g01151 Fragaria vesca HOM05D002861 ORTHO05D003104 9.8e-11 72.0 153 34.0
Sopen04g022070 Solanum pennellii HOM05D002861 ORTHO05D003104 1.3e-10 71.6 65 56.9
Carub.0005s2091 Capsella rubella HOM05D002861 ORTHO05D003104 2.2e-10 70.9 153 27.5
ATR0069G026 Amborella trichopoda HOM05D002861 ORTHO05D003104 2.8e-10 70.5 242 26.4
PSO339G4235 Papaver somniferum HOM05D002861 ORTHO05D003104 2.8e-10 70.5 244 24.2
Zm00001eb181040 Zea mays HOM05D002861 ORTHO05D003104 2.8e-10 70.5 244 24.2
Zm00001eb184490 Zea mays HOM05D002861 ORTHO05D003104 2.8e-10 70.5 244 24.2
AUR62000657 Chenopodium quinoa HOM05D002861 ORTHO05D003104 4.8e-10 69.7 65 55.4
Os02g0504100 Oryza sativa ssp. japonica HOM05D002861 ORTHO05D003104 6.3e-10 69.3 110 37.3
PSO384G4862 Papaver somniferum HOM05D002861 ORTHO05D003104 6.3e-10 69.3 111 36.0
Sp4g20755 Schrenkiella parvula HOM05D002861 ORTHO05D003104 8.3e-10 68.9 161 26.7
QL04p087888 Quercus lobata HOM05D002861 ORTHO05D003104 3.1e-09 67.0 61 54.1
PGSC0003DMG400046883 Solanum tuberosum HOM05D002861 ORTHO05D003104 4.1e-09 66.6 54 63.0
MBI08_g01720_MAGBIO Magnolia biondii HOM05D002861 ORTHO05D003104 5.4e-09 66.2 134 29.1
PSO339G2371 Papaver somniferum HOM05D002861 ORTHO05D003104 5.4e-09 66.2 65 44.6
BcaB01g03686 Brassica carinata HOM05D002861 ORTHO05D003104 7.0e-09 65.9 161 26.7
PSO384G2176 Papaver somniferum HOM05D002861 ORTHO05D003104 9.1e-09 65.5 232 25.9
PGSC0003DMG400015052 Solanum tuberosum HOM05D000542 ORTHO05D000202 9.1e-09 65.5 36 88.9
PGSC0003DMG400028840 Solanum tuberosum HOM05D000442 ORTHO05D001242 9.1e-09 65.5 38 84.2
PSO339G1435 Papaver somniferum HOM05D002861 ORTHO05D003104 1.6e-08 64.7 113 33.6
QL04p087822 Quercus lobata HOM05D002861 ORTHO05D003104 2.7e-08 63.9 61 52.5
AT3G54310 Arabidopsis thaliana HOM05D002861 ORTHO05D003104 1.3e-07 61.6 153 24.2
PSO339G3436 Papaver somniferum HOM05D002861 ORTHO05D003104 1.3e-07 61.6 119 31.1
PGSC0003DMG400003315 Solanum tuberosum HOM05D001213 ORTHO05D001042 6.5e-07 59.3 50 62.0
AL4G35670 Arabidopsis lyrata HOM05D002861 ORTHO05D003104 1.1e-06 58.5 117 31.6
BcaC01g05540 Brassica carinata HOM05D002861 ORTHO05D003104 1.1e-06 58.5 226 23.0
THA.LOC104827371 Tarenaya hassleriana HOM05D002861 ORTHO05D003104 2.5e-06 57.4 64 45.3
PGR142G2464 Punica granatum HOM05D002861 ORTHO05D003104 3.2e-06 57.0 67 43.3
Atru.chr1.2150 Acer truncatum HOM05D002861 ORTHO05D003104 4.2e-06 56.6 72 43.1
BolC8t50560H Brassica oleracea HOM05D002861 ORTHO05D003104 4.2e-06 56.6 64 42.2
CsaV3_2G010230 Cucumis sativus L. HOM05D002861 ORTHO05D003104 4.2e-06 56.6 58 48.3
MD12G1253600 Malus domestica HOM05D002861 ORTHO05D003104 4.2e-06 56.6 64 43.8
Thhalv10017863m.g Eutrema salsugineum HOM05D002861 ORTHO05D003104 5.5e-06 56.2 162 25.3
Sp5g08080 Schrenkiella parvula HOM05D002861 ORTHO05D003104 5.5e-06 56.2 64 42.2
A09p47310 Brassica napus HOM05D002861 ORTHO05D003104 7.2e-06 55.8 64 42.2
BraA09t40192Z Brassica rapa HOM05D002861 ORTHO05D003104 7.2e-06 55.8 64 42.2


User provided reference genes

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