Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 7.4e-200 700.3 341 100.0
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 1.3e-175 619.8 425 75.1
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 2.2e-175 619.0 425 75.1
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 6.8e-161 570.9 408 71.1
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 7.7e-157 557.4 426 67.1
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.5e-155 552.4 426 67.4
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 1.2e-136 490.3 401 60.1
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 6.4e-135 484.6 425 57.4
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 2.4e-134 482.6 425 56.9
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 2.4e-134 482.6 401 60.3
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 9.2e-134 480.7 426 58.2
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 6.0e-133 478.0 425 56.0
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 7.8e-133 477.6 415 58.8
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 7.8e-133 477.6 425 56.5
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 3.3e-131 472.2 419 56.3
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 7.3e-131 471.1 424 55.2
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 1.2e-130 470.3 418 56.9
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 1.6e-130 469.9 425 56.0
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 4.7e-130 468.4 415 56.9
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 4.7e-130 468.4 425 55.8
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 1.1e-129 467.2 425 55.8
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 3.1e-129 465.7 423 56.0
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 5.2e-129 464.9 423 57.0
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 8.9e-129 464.2 419 56.1
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.2e-128 463.8 377 65.0
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 1.5e-128 463.4 425 56.0
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 2.0e-128 463.0 425 54.6
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 2.0e-128 463.0 425 55.8
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 4.4e-128 461.8 419 56.6
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 1.3e-127 460.3 424 55.7
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.9e-127 459.1 423 55.6
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 3.7e-127 458.8 419 55.8
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 3.7e-127 458.8 419 55.8
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 4.9e-127 458.4 423 55.6
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 8.4e-127 457.6 416 55.3
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 1.1e-126 457.2 425 55.3
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.9e-126 456.4 420 54.8
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 1.9e-126 456.4 423 55.3
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 2.4e-126 456.1 418 55.7
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 3.2e-126 455.7 426 56.6
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 7.1e-126 454.5 418 56.0
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 7.1e-126 454.5 419 55.6
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 1.2e-125 453.8 424 55.7
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.1e-125 453.0 418 55.0
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 2.1e-125 453.0 425 53.4
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 6.0e-125 451.4 425 52.2
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.0e-125 451.4 424 55.4
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 7.8e-125 451.1 420 54.3
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 1.3e-124 450.3 418 53.6
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.3e-124 450.3 416 56.2
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 2.3e-124 449.5 418 52.4
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 5.1e-124 448.4 425 51.8
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 8.6e-124 447.6 418 53.1
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 8.6e-124 447.6 427 53.4
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 1.1e-123 447.2 416 53.8
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.1e-123 447.2 424 54.2
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 2.5e-123 446.0 419 54.7
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 3.3e-123 445.7 426 54.9
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.1e-122 443.0 422 55.0
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 3.6e-122 442.2 415 55.2
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 6.2e-122 441.4 418 52.4
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 6.2e-122 441.4 421 54.6
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.8e-121 439.9 419 53.5
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.8e-121 439.9 406 54.9
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.4e-121 439.5 420 51.7
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 2.4e-121 439.5 426 51.9
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.4e-121 439.5 424 53.8
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 1.2e-120 437.2 422 53.8
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 1.2e-120 437.2 422 53.8
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 1.2e-120 437.2 430 53.0
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 2.0e-120 436.4 418 53.8
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 2.6e-120 436.0 422 54.3
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 5.8e-120 434.9 385 56.4
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 9.9e-120 434.1 422 53.3
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 1.7e-119 433.3 420 51.0
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 2.9e-119 432.6 422 53.3
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 4.9e-119 431.8 420 52.6
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 1.4e-118 430.3 420 53.3
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 1.9e-118 429.9 387 56.6
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 2.4e-118 429.5 420 53.3
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 3.2e-118 429.1 421 53.0
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 5.4e-118 428.3 416 54.1
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 1.2e-117 427.2 422 53.3
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.2e-117 427.2 388 55.7
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 1.6e-117 426.8 418 52.9
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 4.6e-117 425.2 418 54.3
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.3e-114 417.2 420 53.3
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 3.6e-114 415.6 421 52.3
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.4e-113 413.7 424 48.6
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.1e-110 404.1 420 48.8
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 1.9e-110 403.3 425 51.5
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 1.6e-109 400.2 420 49.3
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 2.7e-109 399.4 346 57.8
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 4.6e-109 398.7 420 51.4
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.3e-108 397.1 410 50.7
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 3.3e-107 392.5 204 92.2
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 6.9e-105 384.8 416 46.6
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 3.5e-101 372.5 339 55.5
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 1.3e-95 354.0 303 64.0
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.0e-84 317.8 399 44.6
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 2.0e-80 303.5 419 40.3
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.0e-80 303.5 249 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 5.0e-79 298.9 406 41.4
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 7.9e-77 291.6 303 49.2
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 1.5e-72 277.3 192 67.7
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 2.0e-72 276.9 213 60.1
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 4.0e-60 236.1 142 74.6
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 7.5e-59 231.9 142 73.2
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 1.4e-57 227.6 191 56.0
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 1.0e-55 221.5 229 49.3
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.0e-47 194.9 355 41.4
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.8e-47 193.0 367 32.4
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 9.5e-46 188.3 265 39.2
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.9e-39 166.8 222 41.4
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.3e-34 151.4 138 55.8
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 2.1e-29 134.0 138 50.0
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 4.7e-29 132.9 138 51.4
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 3.5e-24 116.7 126 50.8
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 7.1e-17 92.4 78 55.1
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 2.3e-12 77.4 73 54.8
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.6e-11 73.9 85 47.1


User provided reference genes

Program Settings