Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 3.0e-54 214.9 108 100.0
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.4e-40 169.5 95 88.4
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 4.8e-36 154.5 83 94.0
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 4.8e-36 154.5 83 94.0
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.1e-35 153.3 83 92.8
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 2.2e-28 129.0 81 85.2
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 1.0e-25 120.2 83 77.1
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 2.9e-25 118.6 82 80.5
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 6.7e-22 107.5 97 62.9
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 8.8e-22 107.1 97 58.8
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 1.3e-20 103.2 95 60.0
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 3.7e-20 101.7 99 57.6
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 1.8e-19 99.4 96 58.3
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 2.4e-19 99.0 97 53.6
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 2.4e-19 99.0 88 63.6
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 2.4e-19 99.0 88 67.0
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 3.1e-19 98.6 97 51.5
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 6.9e-19 97.4 97 56.7
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 6.9e-19 97.4 97 54.6
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 9.1e-19 97.1 90 58.9
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 9.1e-19 97.1 90 58.9
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 9.1e-19 97.1 97 54.6
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 1.2e-18 96.7 97 54.6
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 2.0e-18 95.9 95 54.7
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 2.0e-18 95.9 94 56.4
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 2.0e-18 95.9 90 58.9
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 3.4e-18 95.1 97 54.6
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 3.4e-18 95.1 95 54.7
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 4.5e-18 94.7 88 59.1
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 5.9e-18 94.4 97 49.5
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 5.9e-18 94.4 94 55.3
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 5.9e-18 94.4 97 53.6
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 1.3e-17 93.2 91 57.1
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 1.3e-17 93.2 96 57.3
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 1.7e-17 92.8 97 52.6
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 1.7e-17 92.8 94 53.2
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 2.2e-17 92.4 100 51.0
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 2.9e-17 92.0 97 49.5
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 5.0e-17 91.3 97 48.5
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 5.0e-17 91.3 91 53.8
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 8.5e-17 90.5 98 53.1
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 8.5e-17 90.5 98 53.1
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 8.5e-17 90.5 97 50.5
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 1.1e-16 90.1 81 59.3
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 1.1e-16 90.1 87 59.8
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 1.1e-16 90.1 98 46.9
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 1.4e-16 89.7 89 57.3
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 1.9e-16 89.4 91 50.5
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 1.9e-16 89.4 84 56.0
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 1.9e-16 89.4 88 54.5
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 2.5e-16 89.0 87 58.6
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 3.2e-16 88.6 96 49.0
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 4.2e-16 88.2 98 44.9
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 4.2e-16 88.2 95 51.6
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 4.2e-16 88.2 96 52.1
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 5.5e-16 87.8 97 49.5
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 5.5e-16 87.8 96 52.1
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 7.2e-16 87.4 95 52.6
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 7.2e-16 87.4 95 52.6
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 9.4e-16 87.0 97 49.5
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 9.4e-16 87.0 97 49.5
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 9.4e-16 87.0 97 49.5
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 9.4e-16 87.0 97 49.5
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 9.4e-16 87.0 94 52.1
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 1.6e-15 86.3 94 46.8
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 1.6e-15 86.3 97 50.5
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 2.1e-15 85.9 97 48.5
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 2.1e-15 85.9 97 49.5
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 2.1e-15 85.9 92 53.3
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 3.6e-15 85.1 96 50.0
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 3.6e-15 85.1 97 50.5
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 4.7e-15 84.7 97 48.5
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 4.7e-15 84.7 96 49.0
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 4.7e-15 84.7 88 54.5
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 8.0e-15 84.0 95 52.6
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 1.4e-14 83.2 97 48.5
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 1.4e-14 83.2 96 47.9
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 1.4e-14 83.2 97 48.5
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 1.8e-14 82.8 95 51.6
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 2.3e-14 82.4 97 45.4
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 2.3e-14 82.4 97 45.4
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 3.0e-14 82.0 85 54.1
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 6.7e-14 80.9 87 57.5
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 6.7e-14 80.9 87 54.0
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 8.8e-14 80.5 95 51.6
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 8.8e-14 80.5 95 49.5
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 1.5e-13 79.7 76 57.9
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 6.3e-12 74.3 91 48.4
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.3e-12 74.3 97 46.4
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.2e-12 73.9 97 46.4
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.0e-11 70.9 97 44.3
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.6e-10 69.7 97 44.3
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 8.5e-09 63.9 88 44.3
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 1.1e-08 63.5 95 42.1
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.5e-08 61.2 80 47.5
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 5.5e-08 61.2 63 55.6
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 2.7e-07 58.9 88 40.9
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 3.0e-06 55.5 90 42.2
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 3.0e-06 55.5 69 49.3
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 4.0e-06 55.1 97 32.0


User provided reference genes

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