Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 6.4e-44 180.3 85 100.0
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.4e-43 179.1 85 98.8
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.2e-42 176.0 85 97.6
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 2.5e-32 141.7 85 74.1
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 4.3e-32 141.0 84 78.6
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 2.8e-31 138.3 86 76.7
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 4.8e-31 137.5 85 74.1
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 8.1e-31 136.7 83 74.7
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 8.1e-31 136.7 83 74.7
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 8.1e-31 136.7 85 74.1
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 1.1e-30 136.3 84 75.0
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 2.4e-30 135.2 83 74.7
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 4.0e-30 134.4 85 72.9
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 4.0e-30 134.4 74 82.4
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.0e-30 134.4 74 82.4
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 4.0e-30 134.4 84 73.8
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 4.0e-30 134.4 84 73.8
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.9e-30 133.7 74 82.4
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.9e-30 133.7 74 82.4
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.9e-30 133.7 74 82.4
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 6.9e-30 133.7 85 72.9
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 6.9e-30 133.7 84 72.6
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 1.2e-29 132.9 84 73.8
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.5e-29 132.5 83 73.5
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.5e-29 132.5 83 73.5
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 2.6e-29 131.7 85 71.8
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 3.4e-29 131.3 85 71.8
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 4.5e-29 131.0 83 72.3
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 5.8e-29 130.6 83 74.7
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 5.8e-29 130.6 86 72.1
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 5.8e-29 130.6 83 72.3
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 9.9e-29 129.8 85 68.2
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 9.9e-29 129.8 85 71.8
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 9.9e-29 129.8 85 70.6
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 1.7e-28 129.0 85 69.4
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.7e-28 129.0 79 74.7
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 1.7e-28 129.0 79 74.7
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.2e-28 128.6 68 85.3
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 2.2e-28 128.6 81 72.8
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 2.9e-28 128.3 85 70.6
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.9e-28 128.3 79 74.7
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 3.8e-28 127.9 81 74.1
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 6.4e-28 127.1 79 70.9
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 6.4e-28 127.1 85 67.1
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 8.4e-28 126.7 86 68.6
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 8.4e-28 126.7 83 72.3
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.1e-27 126.3 85 68.2
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.1e-27 126.3 85 68.2
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.4e-27 125.9 84 70.2
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 1.4e-27 125.9 85 70.6
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.9e-27 125.6 84 71.4
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.9e-27 125.6 89 67.4
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.4e-27 125.2 80 72.5
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 3.2e-27 124.8 94 63.8
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 3.2e-27 124.8 79 72.2
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 3.2e-27 124.8 79 70.9
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 4.2e-27 124.4 87 69.0
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 4.2e-27 124.4 80 72.5
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 4.2e-27 124.4 80 72.5
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 5.5e-27 124.0 94 63.8
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 7.1e-27 123.6 85 65.9
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 7.1e-27 123.6 85 67.1
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 9.3e-27 123.2 84 70.2
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 9.3e-27 123.2 79 70.9
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 9.3e-27 123.2 83 67.5
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.2e-26 122.9 70 81.4
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.2e-26 122.9 70 81.4
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.5e-26 121.3 84 70.2
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 3.5e-26 121.3 76 69.7
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 4.6e-26 120.9 84 69.0
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 4.6e-26 120.9 84 65.5
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 4.6e-26 120.9 87 66.7
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 4.6e-26 120.9 85 69.4
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 6.0e-26 120.6 68 82.4
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 7.9e-26 120.2 83 69.9
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 7.9e-26 120.2 79 68.4
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.0e-25 119.8 84 67.9
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 1.0e-25 119.8 86 69.8
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 1.3e-25 119.4 84 66.7
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.3e-25 119.4 85 67.1
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.3e-25 119.4 89 62.9
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.3e-25 119.4 89 62.9
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 3.0e-25 118.2 82 68.3
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 3.0e-25 118.2 82 68.3
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 3.0e-25 118.2 86 67.4
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 3.0e-25 118.2 80 68.8
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 3.0e-25 118.2 85 63.5
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.0e-25 118.2 70 78.6
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 3.9e-25 117.9 84 64.3
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 5.1e-25 117.5 78 62.8
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 6.7e-25 117.1 80 66.2
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 6.7e-25 117.1 82 65.9
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.1e-24 116.3 85 64.7
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 1.1e-24 116.3 82 64.6
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 1.1e-24 116.3 82 67.1
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.1e-24 116.3 68 75.0
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.5e-24 115.9 83 65.1
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 1.9e-24 115.5 80 66.2
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 2.5e-24 115.2 84 66.7
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.5e-24 115.2 86 61.6
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 3.3e-24 114.8 82 63.4
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 3.3e-24 114.8 68 77.9
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 4.3e-24 114.4 83 65.1
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 5.6e-24 114.0 80 66.2
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 5.6e-24 114.0 90 63.3
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 5.6e-24 114.0 67 80.6
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.3e-23 112.8 79 67.1
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.6e-23 112.5 84 61.9
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 1.6e-23 112.5 68 76.5
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 2.1e-23 112.1 82 62.2
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 2.8e-23 111.7 63 77.8
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 3.7e-23 111.3 77 66.2
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 6.2e-23 110.5 70 67.1
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 8.2e-23 110.2 84 64.3
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.8e-22 109.0 82 59.8
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 2.4e-22 108.6 91 57.1
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 3.1e-22 108.2 86 61.6
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 5.3e-22 107.5 68 70.6
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.2e-21 106.3 79 60.8
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.2e-21 106.3 71 67.6
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.5e-21 105.9 94 55.3
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.5e-21 105.9 85 62.4
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.0e-21 105.5 83 63.9
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 4.5e-21 104.4 83 61.4
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.0e-20 103.2 68 69.1
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.2e-20 102.1 60 78.3
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 4.9e-20 100.9 98 56.1
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 6.5e-20 100.5 85 62.4
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.1e-19 99.8 71 64.8
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 1.4e-19 99.4 111 46.8
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.9e-19 99.0 55 80.0
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.2e-18 96.3 69 71.0
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.2e-18 96.3 52 82.7
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 2.1e-18 95.5 52 82.7
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 4.6e-18 94.4 87 55.2
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.3e-17 92.8 60 70.0
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 1.3e-17 92.8 71 54.9
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.8e-17 92.4 82 53.7
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.8e-17 92.4 72 58.3
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 2.3e-17 92.0 98 50.0
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 3.0e-17 91.7 67 53.7
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 5.1e-17 90.9 53 73.6
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 6.7e-17 90.5 52 75.0
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 8.7e-17 90.1 79 57.0
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 7.4e-16 87.0 101 47.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 2.2e-15 85.5 52 76.9
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.2e-15 85.5 54 64.8
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 8.2e-15 83.6 68 61.8
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.1e-14 83.2 78 50.0
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 6.9e-14 80.5 54 64.8
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 1.2e-13 79.7 77 44.2
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.0e-12 76.6 72 58.3
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 1.4e-11 72.8 46 69.6
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 7.2e-11 70.5 57 52.6
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 6.7e-09 63.9 40 70.0
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 9.7e-08 60.1 101 34.7
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 9.7e-08 60.1 60 43.3
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 2.8e-07 58.5 58 53.4
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 4.8e-07 57.8 59 42.4


User provided reference genes

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