Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 1.6e-244 849.0 420 100.0
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 7.9e-228 793.5 420 93.3
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 2.0e-223 778.9 420 91.9
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.0e-200 700.7 416 81.2
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 2.3e-195 685.6 407 81.1
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 3.5e-191 671.8 415 78.6
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.9e-190 668.7 398 81.4
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 4.1e-168 595.1 389 75.6
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 4.0e-155 552.0 398 70.9
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 4.6e-143 511.9 415 61.7
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 6.2e-140 501.5 423 58.2
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 9.0e-139 497.7 417 58.8
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 5.4e-136 488.4 416 58.2
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.5e-135 485.7 420 56.4
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 1.3e-134 483.8 395 59.2
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 3.0e-134 482.6 418 57.2
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 3.9e-134 482.3 415 57.6
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.1e-134 481.9 325 73.2
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 8.7e-134 481.1 418 57.2
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 3.3e-133 479.2 390 60.3
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.8e-132 476.1 409 57.0
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 8.1e-132 474.6 391 58.3
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 8.1e-132 474.6 416 55.5
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 5.3e-131 471.9 409 56.7
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 1.2e-130 470.7 417 56.4
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 1.2e-130 470.7 414 57.0
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 3.8e-129 465.7 424 53.8
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 6.4e-129 464.9 388 58.5
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.4e-128 463.8 418 54.3
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 7.1e-128 461.5 400 61.8
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 2.1e-127 459.9 412 54.9
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 1.3e-126 457.2 392 56.4
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 1.3e-126 457.2 417 55.2
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.3e-126 457.2 418 54.1
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.9e-126 455.7 418 54.1
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 8.7e-126 454.5 391 57.3
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.6e-124 450.3 409 53.8
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 3.7e-124 449.1 409 53.3
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 4.8e-124 448.7 413 53.3
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.4e-123 447.2 418 53.8
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 4.0e-123 445.7 391 56.0
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 2.6e-122 443.0 395 53.9
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 3.4e-122 442.6 397 56.2
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 3.4e-122 442.6 404 55.2
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 4.5e-122 442.2 382 58.1
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 4.5e-122 442.2 413 52.8
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 4.5e-122 442.2 394 55.1
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.3e-121 440.7 413 52.5
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 1.9e-120 436.8 393 53.4
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 1.2e-119 434.1 392 54.1
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.1e-119 433.3 413 51.8
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 7.9e-119 431.4 392 55.4
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.0e-118 431.0 393 54.2
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 1.0e-118 431.0 367 58.6
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.0e-118 431.0 294 73.1
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 2.5e-117 426.4 415 51.6
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 4.8e-116 422.2 390 54.1
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 1.1e-115 421.0 391 51.9
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 2.4e-115 419.9 380 53.2
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 5.9e-114 415.2 385 54.0
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 7.6e-114 414.8 395 52.2
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 7.2e-112 408.3 424 51.7
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 2.1e-111 406.8 390 52.8
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 1.8e-110 403.7 389 50.9
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 6.7e-110 401.7 410 49.0
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 7.4e-109 398.3 403 49.6
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 9.7e-109 397.9 391 50.4
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 4.8e-108 395.6 414 48.3
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 8.2e-108 394.8 377 50.4
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 8.2e-108 394.8 407 49.9
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 1.4e-107 394.0 391 51.2
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 3.1e-107 392.9 385 50.1
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 2.0e-106 390.2 385 48.8
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 5.9e-106 388.7 412 46.6
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 7.7e-106 388.3 419 48.9
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 1.3e-105 387.5 400 49.8
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 2.9e-105 386.3 400 49.8
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 5.0e-105 385.6 374 51.1
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 6.5e-105 385.2 416 48.8
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 4.2e-104 382.5 377 52.0
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 6.7e-102 375.2 396 48.2
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 1.1e-101 374.4 396 49.2
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 4.4e-101 372.5 396 49.0
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 5.7e-101 372.1 378 47.6
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 7.4e-101 371.7 427 46.6
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 7.4e-101 371.7 392 47.2
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 1.7e-100 370.5 407 49.9
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.8e-100 369.8 369 51.2
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 3.7e-100 369.4 396 48.2
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 3.7e-100 369.4 370 51.4
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 3.7e-100 369.4 375 50.9
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 5.3e-99 365.5 384 47.7
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 5.3e-99 365.5 430 45.6
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 1.5e-98 364.0 369 51.5
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 5.9e-98 362.1 366 51.1
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 1.3e-97 360.9 384 47.7
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 3.8e-97 359.4 384 47.4
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 4.2e-96 355.9 384 46.6
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 4.7e-95 352.4 360 51.1
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.3e-92 344.4 413 46.5
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 1.7e-92 344.0 379 48.0
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 2.6e-85 320.1 253 61.3
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 4.5e-82 309.3 298 51.0
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-79 301.2 169 84.0
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 2.3e-78 297.0 214 72.9
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 7.5e-77 292.0 398 40.2
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.5e-72 276.9 322 48.8
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 6.1e-71 272.3 225 56.4
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 1.2e-69 268.1 248 54.8
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.7e-68 263.1 264 50.4
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 4.1e-67 259.6 195 68.7
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 2.0e-66 257.3 267 47.9
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.0e-65 255.0 278 50.7
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 4.7e-63 246.1 404 38.4
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 6.1e-63 245.7 275 47.6
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 8.0e-63 245.4 206 55.8
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.2e-62 242.7 136 83.1
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 6.8e-62 242.3 171 65.5
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.2e-61 241.5 291 44.7
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 2.0e-61 240.7 193 55.4
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 6.0e-58 229.2 423 35.2
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 1.1e-54 218.4 391 34.0
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 2.6e-53 213.8 193 52.3
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.7e-52 211.1 415 32.0
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.8e-50 202.2 212 53.3
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 3.0e-49 200.3 175 53.7
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 7.3e-48 195.7 421 30.9
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.9e-46 188.7 110 82.7
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.4e-45 186.4 111 81.1
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.9e-41 173.3 113 75.2
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-40 171.0 113 74.3
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 4.3e-40 169.9 247 41.7
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 1.4e-30 138.3 175 43.4
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 1.3e-28 131.7 164 45.7
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-28 131.7 87 74.7
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 5.1e-25 119.8 102 51.0
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-23 115.2 71 77.5
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 1.4e-22 111.7 100 51.0
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 2.6e-21 107.5 80 67.5
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 1.1e-08 65.5 52 59.6
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 8.2e-07 59.3 70 37.1
Peaxi162Scf00365g00014 Petunia axillaris HOM05D000001 ORTHO05D004044 1.8e-06 58.2 105 41.0


User provided reference genes

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