Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.6e-241 839.0 408 100.0
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.6e-201 706.1 408 85.8
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.4e-200 703.0 408 85.0
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.7e-180 635.6 432 75.0
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.3e-178 628.6 379 82.3
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.3e-174 616.7 380 78.9
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.3e-162 575.5 373 75.1
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 3.1e-160 568.9 373 74.0
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 6.9e-160 567.8 371 74.1
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 1.3e-158 563.5 377 72.1
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.2e-157 558.5 386 71.0
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 2.7e-156 555.8 385 69.6
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 2.5e-154 549.3 374 70.9
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 4.8e-153 545.0 398 67.1
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.1e-153 544.3 376 69.9
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 3.1e-152 542.3 408 65.9
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 2.6e-151 539.3 384 68.0
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 4.5e-151 538.5 372 70.7
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 9.9e-151 537.3 375 69.1
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 1.7e-150 536.6 374 70.1
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.7e-150 536.6 374 70.3
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 6.4e-150 534.6 396 65.9
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.1e-149 533.9 375 68.8
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.4e-149 533.5 377 69.5
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 2.1e-148 529.6 371 69.5
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 2.1e-148 529.6 374 69.0
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.7e-148 529.3 375 68.0
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 2.7e-148 529.3 375 68.0
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 3.5e-148 528.9 389 67.1
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 3.5e-148 528.9 380 68.2
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 7.9e-148 527.7 371 68.5
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.8e-147 526.6 374 69.8
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.8e-147 526.6 371 68.5
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.0e-147 525.8 387 67.2
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 5.1e-147 525.0 376 67.3
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 6.7e-147 524.6 375 68.5
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.5e-146 522.7 378 67.7
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.6e-146 521.5 378 68.0
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 5.6e-146 521.5 376 69.7
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 2.1e-145 519.6 402 64.4
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 4.8e-145 518.5 378 67.2
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.8e-145 518.5 378 67.2
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.8e-144 516.5 330 75.8
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 3.1e-144 515.8 378 66.4
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 4.0e-144 515.4 397 64.2
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.2e-143 513.8 376 67.6
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.2e-143 513.8 391 65.2
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.5e-143 513.5 389 65.3
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.5e-143 513.5 378 66.7
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 2.6e-143 512.7 364 69.2
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 3.4e-143 512.3 378 66.7
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 4.5e-143 511.9 351 70.7
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 7.6e-143 511.1 391 64.7
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 7.6e-143 511.1 377 67.1
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.3e-142 510.4 389 66.1
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.3e-142 510.4 436 59.6
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 4.9e-142 508.4 376 66.8
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 4.2e-141 505.4 378 66.4
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 5.5e-141 505.0 386 64.5
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.6e-140 503.4 375 66.1
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 7.9e-140 501.1 356 69.7
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 1.3e-139 500.4 381 65.1
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 1.8e-139 500.0 390 65.1
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 8.7e-139 497.7 372 66.1
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 5.6e-138 495.0 376 66.2
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 7.4e-138 494.6 400 61.0
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 9.6e-138 494.2 375 65.9
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-137 493.8 328 72.3
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 2.1e-137 493.0 376 65.2
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 8.2e-137 491.1 382 63.6
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 1.4e-136 490.3 373 65.1
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 9.0e-136 487.6 407 61.2
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.2e-135 487.3 375 65.6
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.2e-135 487.3 375 64.5
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.5e-135 486.9 386 63.2
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.5e-135 486.9 370 63.5
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.8e-135 485.0 372 64.2
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 2.9e-134 482.6 416 58.4
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 4.2e-133 478.8 330 70.3
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 2.1e-132 476.5 374 61.2
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 2.1e-132 476.5 409 59.9
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 2.1e-132 476.5 371 64.2
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.7e-132 476.1 373 60.6
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 4.6e-132 475.3 372 61.3
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.8e-131 473.4 359 65.5
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.8e-131 473.4 373 63.5
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 3.9e-131 472.2 301 76.1
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 6.7e-131 471.5 373 60.6
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 3.3e-130 469.2 374 60.2
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 4.3e-130 468.8 377 62.6
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 5.7e-130 468.4 382 61.3
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.2e-129 466.5 374 59.9
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.3e-129 464.9 328 68.6
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 8.2e-129 464.5 381 58.5
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.8e-128 463.4 371 60.9
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 2.4e-128 463.0 374 59.4
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 2.4e-128 463.0 371 59.8
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 5.3e-128 461.8 353 64.9
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 6.9e-128 461.5 341 67.4
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.2e-127 460.7 371 59.8
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.2e-127 460.7 381 58.3
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.6e-127 459.5 337 68.0
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 3.4e-127 459.1 382 60.5
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 7.7e-127 458.0 353 64.0
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 8.5e-126 454.5 375 57.9
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 2.5e-125 453.0 329 66.3
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.1e-124 448.4 360 63.9
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.0e-123 447.6 381 60.1
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.5e-122 443.0 346 64.2
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.8e-120 436.8 355 58.6
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.4e-119 432.6 288 71.9
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.2e-116 424.1 375 56.0
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 2.7e-116 422.9 354 61.0
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 3.6e-116 422.5 362 59.9
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.8e-112 410.2 267 74.5
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-110 403.7 392 53.6
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 2.7e-108 396.4 236 77.5
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.8e-105 386.3 379 56.5
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 4.5e-103 379.0 275 64.4
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 1.3e-102 377.5 502 42.0
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.7e-102 377.1 242 73.6
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.2e-102 376.7 254 70.9
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.2e-101 372.9 246 72.8
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 2.3e-99 366.7 241 71.4
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.0e-98 363.6 402 49.5
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.8e-97 359.0 403 46.7
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 6.3e-97 358.6 349 54.2
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 1.2e-95 354.4 219 77.2
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 2.5e-93 346.7 399 47.4
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 2.7e-92 343.2 241 67.6
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 5.2e-91 339.0 314 53.8
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 2.0e-90 337.0 231 71.0
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 2.2e-89 333.6 242 64.9
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 6.3e-89 332.0 383 46.0
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 3.5e-87 326.2 331 54.4
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.0e-86 324.7 429 44.1
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 5.5e-85 318.9 306 56.2
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 4.0e-83 312.8 323 48.9
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 9.2e-80 301.6 223 65.9
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.2e-79 301.2 193 75.6
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 5.9e-79 298.9 196 71.9
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.0e-75 288.1 327 49.5
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.4e-72 277.7 193 71.0
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 1.0e-70 271.6 217 60.4
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.0e-70 271.6 358 46.6
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 4.7e-68 262.7 300 43.7
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.3e-65 254.6 194 63.4
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 6.4e-57 225.7 159 70.4
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 4.7e-52 209.5 160 61.9
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 9.9e-50 201.8 358 39.4
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.6e-47 194.5 237 49.4
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 2.0e-42 177.6 116 70.7
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.6e-42 177.2 151 58.3
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.2e-39 168.3 372 29.3
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 1.5e-37 161.4 220 38.2
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 7.3e-37 159.1 269 39.8
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.3e-36 158.3 313 29.4
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.5e-34 151.4 89 76.4
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 7.1e-32 142.5 181 40.9
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.0e-22 112.1 217 32.7
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 3.4e-18 97.1 83 57.8
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 4.6e-15 86.7 69 55.1
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.0e-14 85.5 69 55.1
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.3e-14 84.3 65 60.0
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 3.0e-14 84.0 68 55.9
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.2e-12 77.8 40 90.0
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.1e-11 75.5 74 47.3
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 6.5e-09 66.2 74 48.6
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.8e-06 58.2 53 50.9
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 1.8e-06 58.2 54 57.4
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 6.7e-06 56.2 53 49.1


User provided reference genes

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