Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 2172.9 1084 100.0
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 2143.6 1084 98.5
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 2139.8 1084 98.2
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 2067.4 1084 94.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 2021.1 1094 92.1
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1978.0 1080 90.5
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1830.5 1081 85.8
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1731.5 1087 78.6
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1697.2 1080 77.0
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1694.9 1073 78.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1690.6 1088 76.4
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1686.4 1087 76.2
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1085 75.1
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1673.3 1083 75.5
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1669.4 1080 76.2
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1667.5 1089 75.3
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1088 75.6
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1664.4 1088 75.5
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1661.0 1090 74.7
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1115 73.6
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1651.0 1101 74.8
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1644.4 1077 75.5
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1639.8 1085 74.7
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1637.9 1084 74.4
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1634.8 1090 74.1
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1634.0 1083 74.1
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1628.2 1087 74.0
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1626.3 1092 73.3
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1625.9 1078 74.0
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1624.8 1073 75.0
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1620.1 1087 73.9
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1619.4 1074 74.1
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1617.4 1091 73.3
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1617.1 1150 70.6
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1605.9 1078 74.0
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1605.5 1087 72.5
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1604.7 1086 72.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1081 72.5
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1602.4 1085 72.8
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1089 73.1
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1599.3 1080 73.1
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1599.3 1083 72.7
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1598.2 1083 71.7
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1596.3 1072 73.8
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1594.3 1087 73.7
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1593.9 1091 71.9
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1081 72.8
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1592.8 1082 72.8
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1588.9 1083 72.0
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1588.5 1083 71.5
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1579.7 1066 73.2
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1074 72.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1103 70.5
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1570.1 1084 71.0
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1569.7 1084 71.7
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1172 68.0
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1568.1 1088 71.6
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1568.1 1084 71.2
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1084 71.2
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1074 71.9
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1084 71.4
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1565.1 1083 71.5
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1564.7 1109 71.8
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1564.7 1075 71.3
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1564.3 1091 71.2
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1562.4 1074 71.8
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1562.0 1084 71.0
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1561.6 1083 70.5
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1083 70.4
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1083 70.7
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1560.4 1074 71.5
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1560.0 1079 70.4
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1169 67.8
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1557.3 1105 69.9
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1553.1 1084 71.7
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1546.9 1074 71.5
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1546.2 996 75.7
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1544.3 1084 71.5
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1536.9 1081 69.3
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1536.9 1081 69.3
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1536.2 1075 70.3
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1535.0 1015 74.4
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1533.9 1076 70.5
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1526.9 1075 71.3
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1520.0 1094 69.4
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1518.8 1078 69.5
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1518.4 1075 70.6
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1516.5 1074 70.5
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1515.4 1075 70.0
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1515.4 1075 70.2
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1515.0 1075 70.2
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1513.8 1075 70.1
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 1075 70.0
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1512.3 1082 68.7
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1511.9 1075 70.1
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1511.9 1075 70.1
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1510.4 1076 69.7
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1509.6 1077 70.3
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1508.4 1068 69.9
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1505.3 1075 68.7
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1504.2 1083 68.7
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1491.5 1086 68.9
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1480.7 1050 69.6
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1478.4 1108 66.2
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1476.1 1108 66.4
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1469.5 1074 66.9
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1444.5 995 72.4
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1419.8 1095 63.7
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1417.9 980 71.7
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1374.0 1082 65.2
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1341.6 1080 65.2
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1222.2 790 76.1
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1175.6 697 83.8
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1163.7 1084 53.0
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1161.0 1078 54.2
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1143.3 1126 51.1
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1140.6 678 82.6
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1136.3 717 79.1
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1129.8 751 74.3
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1127.9 1074 52.4
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1120.5 1078 52.6
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.2e-290 1002.7 836 60.2
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.2e-273 945.7 816 60.3
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 3.5e-259 899.0 612 73.7
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 5.3e-252 875.2 951 48.3
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 8.5e-250 867.8 635 71.2
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 2.8e-245 852.8 506 82.2
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.4e-220 770.8 631 61.5
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 7.0e-212 741.9 987 45.9
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.4e-196 691.0 609 59.4
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.2e-164 583.6 447 66.4
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 7.9e-155 552.4 311 83.9
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 4.7e-131 473.4 383 62.9
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.4e-130 471.9 313 73.2
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.2e-72 278.5 292 51.7
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.4e-66 259.2 240 55.4
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.4e-64 250.0 205 63.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 6.7e-61 240.4 136 78.7
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 8.2e-51 206.8 137 68.6
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.2e-35 155.6 160 53.8
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.1e-34 151.8 133 57.1
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 2.7e-30 138.7 156 48.7
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 3.9e-29 134.8 72 84.7
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.7e-27 129.4 105 58.1
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 2.2e-24 119.0 97 62.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 5.5e-23 114.4 88 65.9
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 2.3e-13 82.4 84 42.9
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 8.8e-13 80.5 49 69.4
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.8e-10 72.8 48 72.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 2.4e-10 72.4 147 34.7
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 3.5e-09 68.6 33 93.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.5e-07 62.4 39 74.4


User provided reference genes

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