Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 1.5e-218 762.7 412 100.0
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 7.8e-204 713.8 395 94.9
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 7.3e-202 707.2 395 94.2
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 6.2e-185 651.0 419 86.4
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 9.0e-168 594.0 392 82.4
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.2e-167 593.6 401 81.3
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 1.1e-149 533.9 393 75.8
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 5.2e-115 418.7 404 58.2
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 3.4e-114 416.0 402 56.7
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 1.1e-112 411.0 410 59.0
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 2.4e-112 409.8 371 63.9
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 7.0e-112 408.3 404 56.9
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 4.7e-108 395.6 385 60.0
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 6.2e-108 395.2 412 56.8
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 1.8e-107 393.7 405 56.0
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 4.6e-103 379.0 382 59.9
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 5.0e-102 375.6 420 53.8
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 5.0e-102 375.6 433 54.7
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 5.0e-102 375.6 404 55.4
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 1.5e-101 374.0 401 53.9
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 9.5e-101 371.3 401 55.1
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.1e-99 367.9 398 55.3
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 1.4e-99 367.5 401 54.6
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 2.3e-99 366.7 410 53.4
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 8.9e-99 364.8 411 51.1
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 2.9e-97 359.8 399 52.9
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 6.4e-97 358.6 404 53.5
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 2.4e-96 356.7 401 53.4
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 5.4e-96 355.5 417 52.5
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 9.2e-96 354.8 407 53.3
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.2e-95 354.4 417 52.5
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 7.8e-95 351.7 380 54.2
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 7.8e-95 351.7 417 52.5
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 1.3e-94 350.9 408 52.7
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 2.3e-94 350.1 387 54.3
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 8.6e-94 348.2 412 51.7
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.5e-93 347.4 397 53.1
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 7.3e-93 345.1 415 49.2
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 2.8e-92 343.2 393 53.7
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 1.1e-91 341.3 405 50.6
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 4.0e-91 339.3 411 51.6
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.5e-90 337.4 407 49.6
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 2.6e-90 336.7 365 53.7
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 5.8e-90 335.5 352 54.5
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 7.6e-90 335.1 414 51.2
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 2.2e-89 333.6 394 51.5
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 4.9e-89 332.4 404 51.7
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 6.4e-89 332.0 444 48.9
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 6.4e-89 332.0 374 53.2
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 8.4e-89 331.6 411 49.6
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 8.4e-89 331.6 411 51.8
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 1.9e-88 330.5 430 49.3
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 3.2e-88 329.7 391 51.4
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 1.6e-87 327.4 464 45.9
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 6.0e-87 325.5 410 49.8
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.0e-86 324.7 445 46.7
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 2.3e-86 323.6 461 45.6
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 4.3e-85 319.3 378 52.4
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 3.6e-84 316.2 415 48.0
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 3.6e-84 316.2 415 48.0
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 3.6e-84 316.2 405 50.1
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 4.7e-84 315.8 402 48.8
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 6.2e-84 315.5 416 47.6
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 1.8e-83 313.9 469 44.8
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 4.0e-83 312.8 391 51.4
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.4e-82 309.7 415 47.7
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 9.9e-82 308.1 412 46.8
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 9.9e-82 308.1 412 46.8
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 9.9e-82 308.1 411 47.7
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 1.3e-81 307.8 469 44.6
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.7e-81 307.4 538 40.7
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 2.2e-81 307.0 465 44.1
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 3.8e-81 306.2 412 46.6
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 2.4e-80 303.5 398 49.0
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 3.2e-80 303.1 428 45.8
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 7.1e-80 302.0 408 46.1
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 9.3e-80 301.6 395 48.1
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 2.7e-79 300.1 402 47.3
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 6.0e-79 298.9 400 48.0
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 2.3e-78 297.0 416 45.2
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 7.3e-77 292.0 433 43.9
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 9.6e-77 291.6 416 47.1
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 1.3e-76 291.2 403 45.9
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 1.3e-76 291.2 430 44.0
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 3.6e-76 289.7 411 47.0
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 2.4e-75 287.0 333 51.7
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 9.0e-75 285.0 413 45.5
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.7e-73 280.8 410 44.4
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 3.2e-72 276.6 426 43.9
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 2.7e-71 273.5 399 45.1
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 4.8e-68 262.7 383 46.7
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 2.4e-67 260.4 319 49.5
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.5e-61 241.1 209 62.2
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.6e-60 237.7 190 66.8
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.9e-57 226.9 189 61.4
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 3.0e-54 216.9 260 51.2
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 6.7e-54 215.7 493 36.5
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 3.6e-39 166.8 413 34.6
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 3.6e-39 166.8 413 34.6
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 7.4e-37 159.1 121 68.6
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 5.9e-34 149.4 510 29.6
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 8.5e-33 145.6 234 46.2
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.3e-30 137.5 153 56.9
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 2.4e-27 127.5 185 41.1
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.8e-25 120.2 167 46.1
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 4.2e-24 116.7 126 53.2
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 4.2e-24 116.7 84 65.5
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 2.3e-22 110.9 122 54.9
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 7.5e-21 105.9 70 71.4
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 7.7e-18 95.9 379 27.4
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 6.5e-17 92.8 202 28.7
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 2.5e-16 90.9 197 33.0
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 7.2e-16 89.4 86 53.5
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 1.7e-12 78.2 70 55.7
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 3.8e-09 67.0 78 44.9
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 6.1e-07 59.7 110 36.4
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 5.2e-06 56.6 48 60.4


User provided reference genes

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