Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 7.1e-147 524.2 331 100.0
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 3.4e-101 372.5 307 79.2
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.2e-100 369.8 308 82.8
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.1e-94 350.9 306 75.5
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.1e-94 350.9 313 71.9
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.9e-91 340.1 303 75.6
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.9e-91 340.1 305 69.5
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 1.3e-87 327.4 318 73.0
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.0e-81 306.2 313 62.6
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.5e-80 303.9 334 57.2
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.3e-79 300.8 313 63.9
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 6.3e-79 298.5 299 69.9
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 7.0e-78 295.0 306 64.1
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 9.1e-78 294.7 310 58.4
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.6e-77 293.9 301 64.8
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 5.9e-77 292.0 326 53.7
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.0e-76 291.2 304 59.5
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.2e-76 290.0 307 59.0
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.9e-76 289.7 304 59.2
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 5.0e-76 288.9 302 58.3
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 5.0e-76 288.9 300 68.0
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 5.0e-76 288.9 307 60.9
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.5e-76 288.5 301 56.1
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.9e-75 287.0 306 60.8
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 5.5e-75 285.4 302 68.2
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 7.2e-75 285.0 305 63.6
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 9.4e-75 284.6 303 64.4
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.6e-74 283.9 308 61.0
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 2.1e-74 283.5 286 70.6
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 4.7e-74 282.3 315 54.6
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 4.7e-74 282.3 313 54.6
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.1e-74 282.0 311 63.7
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 6.1e-74 282.0 309 64.4
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 6.1e-74 282.0 309 63.8
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.0e-73 281.2 311 62.7
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.0e-73 281.2 327 57.5
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.0e-73 281.2 297 59.9
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 1.8e-73 280.4 303 61.1
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 2.3e-73 280.0 301 63.8
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 2.3e-73 280.0 302 62.6
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.0e-73 279.6 343 53.1
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.3e-72 276.2 310 58.1
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.4e-72 275.8 318 53.8
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.4e-72 275.8 318 53.8
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 5.7e-72 275.4 313 60.1
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.7e-71 273.9 304 64.5
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 1.7e-71 273.9 304 64.8
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 8.2e-71 271.6 314 62.4
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.8e-70 270.4 308 59.4
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.8e-70 270.4 203 87.7
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 2.4e-70 270.0 337 55.2
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 5.3e-70 268.9 304 63.8
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.3e-70 268.9 322 57.5
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 7.0e-70 268.5 329 58.4
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 9.1e-70 268.1 296 64.2
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 2.7e-69 266.5 311 61.1
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 4.5e-69 265.8 298 59.1
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 4.5e-69 265.8 314 60.8
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 5.9e-69 265.4 306 61.8
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 7.7e-69 265.0 299 64.9
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.3e-68 264.2 293 56.7
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.2e-68 263.5 311 62.7
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 3.8e-68 262.7 299 62.5
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 5.0e-68 262.3 320 55.9
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 8.5e-68 261.5 303 53.8
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 8.5e-68 261.5 319 66.5
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 1.5e-67 260.8 307 58.6
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.5e-67 260.8 314 57.6
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.5e-67 260.8 312 66.3
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.5e-67 260.0 322 54.7
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.5e-67 260.0 303 56.1
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 5.5e-67 258.8 326 58.9
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 9.4e-67 258.1 315 61.3
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.6e-66 257.3 292 54.8
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.6e-66 257.3 326 58.6
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 2.1e-66 256.9 304 64.5
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 2.1e-66 256.9 311 57.2
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 8.0e-66 255.0 306 61.8
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 1.0e-65 254.6 301 64.5
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.4e-65 254.2 315 58.7
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-65 254.2 305 60.0
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-65 254.2 305 60.0
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 3.0e-65 253.1 293 53.9
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 3.0e-65 253.1 301 58.8
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 4.0e-65 252.7 317 54.9
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.0e-65 252.7 312 63.5
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.2e-64 251.1 308 58.8
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.5e-64 250.8 294 53.4
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 2.6e-64 250.0 313 62.0
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 2.6e-64 250.0 311 57.6
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 4.4e-64 249.2 312 57.7
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 5.7e-64 248.8 301 58.8
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.3e-63 247.7 323 57.9
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.7e-63 247.3 306 59.2
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 2.2e-63 246.9 310 62.9
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 2.8e-63 246.5 294 58.8
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 3.7e-63 246.1 294 61.2
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 8.3e-63 245.0 309 63.4
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 8.3e-63 245.0 306 55.9
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.8e-62 243.8 316 51.9
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 4.1e-62 242.7 313 57.8
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 9.1e-62 241.5 307 65.8
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 9.1e-62 241.5 315 54.9
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.6e-61 240.7 300 58.0
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 2.0e-61 240.4 308 59.1
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 2.0e-61 240.4 314 64.3
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 4.5e-61 239.2 317 64.4
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 4.5e-61 239.2 301 58.8
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 4.5e-61 239.2 306 62.4
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 7.7e-61 238.4 294 61.2
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 1.3e-60 237.7 305 56.7
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.9e-60 236.5 299 56.5
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.9e-60 236.5 299 56.5
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 6.5e-60 235.3 322 55.9
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 8.5e-60 235.0 318 60.1
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 1.1e-59 234.6 311 54.3
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.6e-58 230.7 293 59.4
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 6.1e-58 228.8 318 57.2
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 6.1e-58 228.8 299 53.5
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 2.3e-57 226.9 321 50.8
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.0e-57 226.5 304 55.9
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 8.8e-57 224.9 302 55.6
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 1.3e-55 221.1 295 54.9
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 4.9e-55 219.2 309 50.8
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 5.4e-54 215.7 295 53.2
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 9.2e-54 214.9 302 55.3
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 5.0e-52 209.1 350 49.1
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.1e-51 208.0 291 53.6
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 1.5e-51 207.6 298 52.3
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 3.3e-51 206.5 228 64.0
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.2e-50 204.5 294 52.7
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.6e-50 204.1 298 49.0
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.7e-50 202.6 303 53.5
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-49 201.1 258 56.6
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 2.3e-49 200.3 396 44.4
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.0e-49 199.5 297 53.2
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 2.6e-48 196.8 313 46.3
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.1e-46 191.4 141 70.9
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.8e-46 190.7 144 66.0
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 1.8e-46 190.7 296 49.7
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.9e-44 183.0 134 68.7
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 5.0e-44 182.6 297 55.9
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.2e-41 172.6 323 41.5
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 6.8e-41 172.2 146 62.3
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.0e-40 170.6 305 45.9
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.6e-40 170.2 130 65.4
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.4e-40 169.5 325 43.1
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 2.2e-39 167.2 142 60.6
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 3.7e-39 166.4 230 63.5
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.4e-38 163.7 278 48.6
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 1.9e-35 154.1 108 69.4
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 7.1e-30 135.6 104 62.5
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 6.0e-29 132.5 81 84.0
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.0e-28 131.7 83 80.7
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.3e-28 131.3 206 53.9
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 2.5e-27 127.1 306 40.8
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 8.1e-26 122.1 84 77.4
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 5.2e-25 119.4 312 42.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 4.4e-24 116.3 348 41.4
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 4.6e-21 106.3 340 43.8
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.3e-20 104.8 138 45.7
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 2.3e-20 104.0 80 67.5
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 2.3e-20 104.0 305 43.6
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 3.3e-19 100.1 119 49.6
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 4.3e-19 99.8 206 52.9
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 7.3e-19 99.0 313 30.0
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.8e-18 97.1 84 64.3
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.2e-18 95.9 73 68.5
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 4.0e-17 93.2 78 62.8
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.5e-16 91.3 82 61.0
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.6e-16 90.5 118 52.5
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.4e-16 90.1 153 43.1
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 1.4e-14 84.7 74 58.1
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 6.0e-13 79.3 307 43.3
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.3e-12 77.4 45 86.7
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 3.9e-12 76.6 65 60.0
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.8e-10 69.7 80 53.8
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.3e-09 66.2 80 50.0
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.1e-06 58.5 80 43.8
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 1.1e-06 58.5 79 46.8
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 2.4e-06 57.4 44 70.5
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.2e-06 56.6 67 49.3


User provided reference genes

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