Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 8.7e-30 132.9 63 100.0
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 5.3e-27 123.6 63 92.1
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.0e-26 121.7 63 90.5
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 2.9e-25 117.9 58 94.8
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 6.5e-25 116.7 63 85.7
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.4e-19 99.0 61 73.8
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 5.9e-18 93.6 62 69.4
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 7.6e-18 93.2 58 67.2
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 3.8e-17 90.9 56 73.2
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 5.0e-17 90.5 62 61.3
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 1.1e-16 89.4 62 64.5
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.1e-16 89.4 45 93.3
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 5.5e-16 87.0 59 67.8
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 9.3e-16 86.3 62 64.5
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 9.3e-16 86.3 55 63.6
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 9.3e-16 86.3 51 68.6
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 1.2e-15 85.9 51 68.6
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.2e-15 85.9 72 59.7
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.6e-15 85.5 57 68.4
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 2.7e-15 84.7 56 66.1
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 2.7e-15 84.7 57 68.4
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 6.1e-15 83.6 57 61.4
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.3e-14 82.4 94 48.9
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 1.8e-14 82.0 59 67.8
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 1.8e-14 82.0 50 66.0
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 2.3e-14 81.6 63 58.7
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.9e-14 80.9 56 66.1
Sopen07g008940 Solanum pennellii HOM05D007120 ORTHO05D008881 3.9e-14 80.9 39 94.9
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 5.1e-14 80.5 51 66.7
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 8.7e-14 79.7 56 66.1
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 1.1e-13 79.3 53 62.3
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 1.5e-13 79.0 62 59.7
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.9e-13 78.6 56 62.5
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.9e-13 78.6 56 62.5
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 1.9e-13 78.6 58 58.6
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 3.3e-13 77.8 57 61.4
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.3e-13 77.4 56 60.7
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 5.7e-13 77.0 57 59.6
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 5.7e-13 77.0 61 57.4
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 5.7e-13 77.0 54 64.8
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 5.7e-13 77.0 54 64.8
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 5.7e-13 77.0 54 64.8
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 7.4e-13 76.6 56 60.7
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 7.4e-13 76.6 52 61.5
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 9.7e-13 76.3 54 61.1
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 1.3e-12 75.9 58 56.9
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 1.6e-12 75.5 45 71.1
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 2.8e-12 74.7 56 55.4
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 3.7e-12 74.3 55 58.2
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 3.7e-12 74.3 55 58.2
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 3.7e-12 74.3 55 58.2
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 4.8e-12 73.9 55 63.6
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.8e-12 73.9 55 63.6
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 8.2e-12 73.2 53 62.3
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 8.2e-12 73.2 49 69.4
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 8.2e-12 73.2 53 58.5
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 1.1e-11 72.8 52 57.7
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 1.1e-11 72.8 52 57.7
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 1.1e-11 72.8 52 57.7
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 1.1e-11 72.8 52 57.7
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.1e-11 72.8 51 64.7
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.4e-11 72.4 54 59.3
Peaxi162Scf00184g00003 Petunia axillaris HOM05D007120 ORTHO05D008881 2.4e-11 71.6 41 78.0
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 9.1e-11 69.7 56 53.6
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 1.2e-10 69.3 54 53.7
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 2.0e-10 68.6 57 56.1
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 2.0e-10 68.6 57 56.1
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 3.4e-10 67.8 48 64.6
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 5.9e-10 67.0 47 66.0
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 1.0e-09 66.2 52 51.9
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.3e-09 65.9 62 51.6
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.7e-09 65.5 54 59.3
Hund15797 Selenicereus undatus HOM05D007120 ORTHO05D008881 1.7e-09 65.5 44 61.4
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 2.2e-09 65.1 46 60.9
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.2e-09 65.1 44 63.6
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 2.2e-09 65.1 48 60.4
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 2.9e-09 64.7 57 47.4
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 2.9e-09 64.7 57 47.4
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 3.8e-09 64.3 53 50.9
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 3.8e-09 64.3 48 56.2
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 5.0e-09 63.9 46 58.7
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 5.0e-09 63.9 46 58.7
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 5.0e-09 63.9 48 58.3
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 6.5e-09 63.5 46 58.7
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 6.5e-09 63.5 46 58.7
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 6.5e-09 63.5 57 47.4
TAR633G1173 Trochodendron aralioides HOM05D009315 ORTHO05D008839 6.5e-09 63.5 37 78.4
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 8.5e-09 63.2 38 68.4
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 1.1e-08 62.8 48 60.4
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 1.4e-08 62.4 48 56.2
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 1.9e-08 62.0 44 68.2
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.9e-08 62.0 72 47.2
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 2.5e-08 61.6 37 67.6
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 3.2e-08 61.2 48 54.2
HPP92_026799 Vanilla planifolia HOM05D007120 ORTHO05D008881 3.2e-08 61.2 59 57.6
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 4.2e-08 60.8 40 60.0
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 5.5e-08 60.5 40 72.5
EL10Ac2g02666 Beta vulgaris HOM05D007120 ORTHO05D008881 7.2e-08 60.1 44 52.3
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 1.2e-07 59.3 48 52.1
ClCG11G005640 Citrullus lanatus HOM05D007120 ORTHO05D008881 1.6e-07 58.9 40 67.5
CBR_g11002 Chara braunii HOM05D007120 ORTHO05D008881 3.6e-07 57.8 61 37.7
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 6.1e-07 57.0 44 63.6
HPP92_000774 Vanilla planifolia HOM05D007120 ORTHO05D008881 6.1e-07 57.0 43 67.4
Aa31LG3G1380 Aethionema arabicum HOM05D007120 ORTHO05D008881 7.9e-07 56.6 40 62.5
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 1.0e-06 56.2 47 55.3
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 1.4e-06 55.8 47 53.2
BcaC01g05378 Brassica carinata HOM05D015100 ORTHO05D031876 3.0e-06 54.7 38 63.2
C03p27210 Brassica napus HOM05D015100 ORTHO05D031876 3.0e-06 54.7 38 63.2
Ciclev10033060m.g Citrus clementina HOM05D007120 ORTHO05D008881 6.7e-06 53.5 39 61.5
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 6.7e-06 53.5 40 52.5


User provided reference genes

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