Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020258 Solanum tuberosum HOM05D000098 ORTHO05D000523 2.6e-37 158.3 84 100.0
Sopen02g038690 Solanum pennellii HOM05D000098 ORTHO05D000523 1.4e-35 152.5 84 96.4
Solyc02g094050.4 Solanum lycopersicum HOM05D000098 ORTHO05D000523 1.2e-34 149.4 84 94.0
CAN.G473.90 Capsicum annuum HOM05D000098 ORTHO05D000523 4.4e-29 131.0 84 85.7
Nitab4.5_0002887g0030 Nicotiana tabacum HOM05D000098 ORTHO05D000523 4.9e-28 127.5 84 85.7
Nitab4.5_0007150g0030 Nicotiana tabacum HOM05D000098 ORTHO05D000523 2.7e-26 121.7 86 82.6
Peaxi162Scf00420g00051 Petunia axillaris HOM05D000098 ORTHO05D000523 2.0e-21 105.5 87 66.7
Eucgr.I01655 Eucalyptus grandis HOM05D000098 ORTHO05D000523 3.3e-16 88.2 62 72.6
Duzib264G0079 Durio zibethinus HOM05D000098 ORTHO05D000523 3.1e-14 81.6 54 70.4
Glyma.19G089200 Glycine max HOM05D000098 ORTHO05D000523 3.1e-14 81.6 46 80.4
COL.COLO4_17173 Corchorus olitorius HOM05D000098 ORTHO05D000523 4.0e-14 81.3 76 59.2
Duzib147G1200 Durio zibethinus HOM05D000098 ORTHO05D000523 5.2e-14 80.9 54 72.2
PGR142G3943 Punica granatum HOM05D000098 ORTHO05D000523 5.2e-14 80.9 79 58.2
CANSAT64G2237 Cannabis sativa HOM05D000098 ORTHO05D000523 6.8e-14 80.5 42 85.7
Aqoxy3G01503 Aquilegia oxysepala HOM05D000098 ORTHO05D000523 8.9e-14 80.1 55 72.7
Thecc.04G033800 Theobroma cacao HOM05D000098 ORTHO05D000523 1.5e-13 79.3 83 54.2
Ciclev10016947m.g Citrus clementina HOM05D000098 ORTHO05D000523 2.0e-13 79.0 48 72.9
Gohir.D07G234400 Gossypium hirsutum HOM05D000098 ORTHO05D000523 2.6e-13 78.6 83 56.6
Gohir.A07G227300 Gossypium hirsutum HOM05D000098 ORTHO05D000523 7.6e-13 77.0 83 55.4
TPR.G2786 Trifolium pratense HOM05D000098 ORTHO05D000523 9.9e-13 76.6 66 60.6
Manes.17G103900 Manihot esculenta HOM05D000098 ORTHO05D000523 1.7e-12 75.9 77 54.5
MD17G1013700 Malus domestica HOM05D000098 ORTHO05D000523 2.2e-12 75.5 43 76.7
Lalb_Chr21g0317521 Lupinus albus HOM05D000098 ORTHO05D000523 3.8e-12 74.7 55 65.5
Actinidia05913 Actinidia chinensis HOM05D000098 ORTHO05D000523 8.4e-12 73.6 86 51.2
Cfa007242 Carpinus fangiana HOM05D000098 ORTHO05D000523 1.1e-11 73.2 77 50.6
CiPaw.03G054100 Carya illinoinensis HOM05D000098 ORTHO05D000523 1.1e-11 73.2 43 72.1
Gorai.001G270000 Gossypium raimondii HOM05D000098 ORTHO05D000523 1.1e-11 73.2 83 54.2
THA.LOC104805333 Tarenaya hassleriana HOM05D000098 ORTHO05D000523 1.1e-11 73.2 52 61.5
HanXRQChr15g0486951 Helianthus annuus HOM05D000098 ORTHO05D000523 1.4e-11 72.8 53 71.7
MD09G1013000 Malus domestica HOM05D000098 ORTHO05D000523 1.4e-11 72.8 43 74.4
QL02p071678 Quercus lobata HOM05D000098 ORTHO05D000523 1.4e-11 72.8 80 51.2
GSVIVG01001807001 Vitis vinifera HOM05D000098 ORTHO05D000523 1.4e-11 72.8 53 66.0
Prupe.3G304200 Prunus persica HOM05D000098 ORTHO05D000523 1.9e-11 72.4 43 74.4
Haze_14858 Corylus avellana HOM05D000098 ORTHO05D000523 2.4e-11 72.0 77 49.4
Glyma.05G076700 Glycine max HOM05D000098 ORTHO05D000523 2.4e-11 72.0 106 44.3
Sabra16G0213100 Salix brachista HOM05D000098 ORTHO05D000523 3.2e-11 71.6 43 72.1
MELO3C008198.2 Cucumis melo HOM05D000098 ORTHO05D000523 5.4e-11 70.9 42 73.8
Phvul.004G054700 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 5.4e-11 70.9 105 43.8
TAR629G2880 Trochodendron aralioides HOM05D000098 ORTHO05D000523 5.4e-11 70.9 80 47.5
VMungo1383G1312 Vigna mungo HOM05D000098 ORTHO05D000523 5.4e-11 70.9 34 88.2
CsaV3_2G034170 Cucumis sativus L. HOM05D000098 ORTHO05D000523 7.1e-11 70.5 42 73.8
Atru.chr6.2537 Acer truncatum HOM05D000098 ORTHO05D000523 9.2e-11 70.1 41 75.6
Actinidia36188 Actinidia chinensis HOM05D000098 ORTHO05D000523 9.2e-11 70.1 55 63.6
CARHR148410 Cardamine hirsuta HOM05D000098 ORTHO05D000523 9.2e-11 70.1 53 62.3
arahy.Tifrunner.gnm1.ann1.5MI3H4 Arachis hypogaea HOM05D000098 ORTHO05D000523 1.2e-10 69.7 44 75.0
Ca_04430_v3 Cicer arietinum L. HOM05D000098 ORTHO05D000523 1.6e-10 69.3 51 60.8
Psat0s1551g0240 Pisum sativum HOM05D000098 ORTHO05D000523 2.1e-10 68.9 43 69.8
arahy.Tifrunner.gnm1.ann1.19LA55 Arachis hypogaea HOM05D000098 ORTHO05D000523 2.7e-10 68.6 44 72.7
ClCG11G007050 Citrullus lanatus HOM05D000098 ORTHO05D000523 2.7e-10 68.6 40 72.5
DCAR_002951 Daucus carota HOM05D000098 ORTHO05D000523 2.7e-10 68.6 92 52.2
FAN02G2652 Fragaria x ananassa HOM05D000098 ORTHO05D000523 2.7e-10 68.6 45 75.6
MBI11_g07449_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D000523 2.7e-10 68.6 84 45.2
Phvul.001G095100 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 2.7e-10 68.6 77 51.9
AL5G16320 Arabidopsis lyrata HOM05D000098 ORTHO05D000523 3.5e-10 68.2 43 65.1
Carub.0005s0543 Capsella rubella HOM05D000098 ORTHO05D000523 3.5e-10 68.2 43 65.1
RcHm_v2.0_Chr2g0175271 Rosa chinensis HOM05D000098 ORTHO05D000523 3.5e-10 68.2 38 78.9
AT3G27200 Arabidopsis thaliana HOM05D000098 ORTHO05D000523 4.6e-10 67.8 38 71.1
EL10Ac2g02843 Beta vulgaris HOM05D014602 ORTHO05D000523 4.6e-10 67.8 44 68.2
Cc07_g00690 Coffea canephora HOM05D000098 ORTHO05D000523 4.6e-10 67.8 51 66.7
HanXRQChr09g0256161 Helianthus annuus HOM05D000098 ORTHO05D000523 4.6e-10 67.8 37 81.1
Lsat_1_v5_gn_4_185141 Lactuca sativa HOM05D000098 ORTHO05D000523 4.6e-10 67.8 37 81.1
TPR.G28878 Trifolium pratense HOM05D000098 ORTHO05D000523 4.6e-10 67.8 43 69.8
vmacro05948 Vaccinium macrocarpon HOM05D000098 ORTHO05D000523 4.6e-10 67.8 44 65.9
A06p41410 Brassica napus HOM05D000098 ORTHO05D000523 6.0e-10 67.4 57 57.9
C07p36250 Brassica napus HOM05D000098 ORTHO05D000523 6.0e-10 67.4 57 57.9
BolC7t44139H Brassica oleracea HOM05D000098 ORTHO05D000523 6.0e-10 67.4 57 57.9
BraA06t27066Z Brassica rapa HOM05D000098 ORTHO05D000523 6.0e-10 67.4 57 57.9
Lju41A51T45 Lonicera japonica HOM05D000098 ORTHO05D000523 6.0e-10 67.4 44 72.7
Lalb_Chr02g0157751 Lupinus albus HOM05D000098 ORTHO05D000523 6.0e-10 67.4 44 65.9
Rhsim10G0007300 Rhododendron simsii HOM05D000098 ORTHO05D000523 6.0e-10 67.4 37 75.7
ECA232G2595 Erigeron canadensis HOM05D000172 ORTHO05D000781 1.0e-09 66.6 41 73.2
Thhalv10005008m.g Eutrema salsugineum HOM05D000098 ORTHO05D000523 1.0e-09 66.6 41 65.9
FAN09G1347 Fragaria x ananassa HOM05D000098 ORTHO05D000523 1.0e-09 66.6 45 73.3
FAN14G0530 Fragaria x ananassa HOM05D000098 ORTHO05D000523 1.0e-09 66.6 45 73.3
Medtr6g023760 Medicago truncatula HOM05D000098 ORTHO05D000523 1.0e-09 66.6 40 70.0
Potri.001G332200 Populus trichocarpa HOM05D000098 ORTHO05D000523 1.0e-09 66.6 85 45.9
Sp2g16330 Schrenkiella parvula HOM05D000098 ORTHO05D000523 1.0e-09 66.6 53 60.4
BcaC03g17436 Brassica carinata HOM05D000098 ORTHO05D000523 1.3e-09 66.2 41 65.9
C02p53840 Brassica napus HOM05D000098 ORTHO05D000523 1.3e-09 66.2 41 65.9
BolC2t11452H Brassica oleracea HOM05D000098 ORTHO05D000523 1.3e-09 66.2 41 65.9
FvH4_6g53210 Fragaria vesca HOM05D000098 ORTHO05D000523 1.3e-09 66.2 38 76.3
FAN05G1100 Fragaria x ananassa HOM05D000098 ORTHO05D000523 1.3e-09 66.2 38 76.3
PSO478G3906 Papaver somniferum HOM05D000098 ORTHO05D000523 1.3e-09 66.2 45 64.4
TWI36G1629 Tripterygium wilfordii HOM05D000098 ORTHO05D000523 1.7e-09 65.9 33 84.8
BcaC06g33844 Brassica carinata HOM05D000098 ORTHO05D000523 2.3e-09 65.5 57 56.1
BcaC06g33847 Brassica carinata HOM05D000098 ORTHO05D000523 2.3e-09 65.5 57 56.1
Hma1.2p1_0279F.1_g112620 Hydrangea macrophylla HOM05D000098 ORTHO05D000523 2.3e-09 65.5 43 65.1
Lj2g0016183 Lotus japonicus HOM05D000098 ORTHO05D000523 3.0e-09 65.1 33 78.8
Dinv25668 Davidia involucrata HOM05D000098 ORTHO05D000523 3.9e-09 64.7 83 48.2
Migut.F00075 Erythranthe guttata HOM05D000098 ORTHO05D000523 3.9e-09 64.7 37 70.3
SalBow4G2319 Salvia bowleyana HOM05D000098 ORTHO05D000523 3.9e-09 64.7 51 60.8
VMungo0464G0786 Vigna mungo HOM05D000098 ORTHO05D000523 3.9e-09 64.7 98 42.9
SalBow4G1536 Salvia bowleyana HOM05D000098 ORTHO05D000523 6.6e-09 63.9 82 48.8
PSO017G3796 Papaver somniferum HOM05D000098 ORTHO05D000523 8.7e-09 63.5 42 66.7
Sc07g0004130 Simmondsia chinensis HOM05D000098 ORTHO05D000523 1.1e-08 63.2 34 70.6
AUR62026833 Chenopodium quinoa HOM05D000098 ORTHO05D000523 2.5e-08 62.0 33 78.8
COL.COLO4_13000 Corchorus olitorius HOM05D000098 ORTHO05D000523 2.5e-08 62.0 49 55.1
Oeu041961.1 Olea europaea HOM05D000098 ORTHO05D000523 3.3e-08 61.6 41 65.9
ATR0561G220 Amborella trichopoda HOM05D000098 ORTHO05D000523 4.3e-08 61.2 83 43.4
MBI02_g29697_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D000523 5.6e-08 60.8 51 54.9
Nn6g33805 Nelumbo nucifera HOM05D000098 ORTHO05D000523 7.3e-08 60.5 77 44.2
MSTRG.24088 Avicennia marina HOM05D000098 ORTHO05D000523 9.6e-08 60.1 85 43.5
AUR62037219 Chenopodium quinoa HOM05D000098 ORTHO05D000523 9.6e-08 60.1 33 75.8
Gohir.A04G107300 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.2e-07 59.7 54 50.0
Sed0011368 Sechium edule HOM05D000098 ORTHO05D000523 1.2e-07 59.7 58 50.0
QL08p057218 Quercus lobata HOM05D000098 ORTHO05D000523 1.6e-07 59.3 53 50.9
Aa31LG2G5210 Aethionema arabicum HOM05D000098 ORTHO05D000523 2.8e-07 58.5 42 64.3
SGA_v2.0_scaffold18G08529 Striga asiatica HOM05D000098 ORTHO05D000523 2.8e-07 58.5 41 63.4
TAR627G0832 Trochodendron aralioides HOM05D000098 ORTHO05D000523 4.7e-07 57.8 46 50.0
Atru.chr6.3131 Acer truncatum HOM05D000098 ORTHO05D000523 8.1e-07 57.0 41 56.1
Actinidia12493 Actinidia chinensis HOM05D000098 ORTHO05D000523 8.1e-07 57.0 41 56.1
Sc21g0001760 Simmondsia chinensis HOM05D000098 ORTHO05D000523 8.1e-07 57.0 42 54.8
CiPaw.03G163500 Carya illinoinensis HOM05D000098 ORTHO05D000523 1.4e-06 56.2 54 44.4
GSVIVG01030639001 Vitis vinifera HOM05D000098 ORTHO05D000523 1.4e-06 56.2 56 46.4
Thecc.02G162900 Theobroma cacao HOM05D000098 ORTHO05D000523 1.8e-06 55.8 39 56.4
Actinidia24275 Actinidia chinensis HOM05D000098 ORTHO05D000523 2.4e-06 55.5 62 48.4
CSS0015388 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000523 2.4e-06 55.5 55 49.1
CARHR148400 Cardamine hirsuta HOM05D000098 ORTHO05D000523 2.4e-06 55.5 52 48.1
Dinv18537 Davidia involucrata HOM05D000098 ORTHO05D000523 2.4e-06 55.5 41 56.1
Duzib052G1086 Durio zibethinus HOM05D000098 ORTHO05D000523 2.4e-06 55.5 39 56.4
Manes.13G074200 Manihot esculenta HOM05D000098 ORTHO05D000523 2.4e-06 55.5 53 50.9
QL08p033974 Quercus lobata HOM05D000098 ORTHO05D000523 2.4e-06 55.5 54 48.1
CANSAT64G1319 Cannabis sativa HOM05D000098 ORTHO05D000523 3.1e-06 55.1 58 48.3
CiPaw.04G118500 Carya illinoinensis HOM05D000098 ORTHO05D000523 3.1e-06 55.1 40 55.0
Dinv10911 Davidia involucrata HOM05D000098 ORTHO05D000523 3.1e-06 55.1 41 56.1
Gorai.007G251100 Gossypium raimondii HOM05D000098 ORTHO05D001228 3.1e-06 55.1 77 39.0
MD09G1104100 Malus domestica HOM05D000098 ORTHO05D000523 3.1e-06 55.1 54 48.1
Gohir.A12G135000 Gossypium hirsutum HOM05D000098 ORTHO05D000523 4.0e-06 54.7 51 51.0
Gohir.D12G138700 Gossypium hirsutum HOM05D000098 ORTHO05D000523 4.0e-06 54.7 51 51.0
Gorai.008G150100 Gossypium raimondii HOM05D000098 ORTHO05D000523 4.0e-06 54.7 51 51.0
Peaxi162Scf00012g03011 Petunia axillaris HOM05D000098 ORTHO05D000523 4.0e-06 54.7 53 47.2
Sc12g0002420 Simmondsia chinensis HOM05D000098 ORTHO05D000523 4.0e-06 54.7 45 48.9
Zm00001eb307480 Zea mays HOM05D000098 ORTHO05D000523 5.2e-06 54.3 57 50.9
CSS0028576 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000523 6.9e-06 53.9 55 49.1
MD17G1091800 Malus domestica HOM05D000098 ORTHO05D000523 6.9e-06 53.9 61 45.9
Os02g0653200 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D000523 6.9e-06 53.9 56 48.2
CsaV3_2G029900 Cucumis sativus L. HOM05D000098 ORTHO05D000523 9.0e-06 53.5 56 42.9
Gohir.D13G063300 Gossypium hirsutum HOM05D000098 ORTHO05D000523 9.0e-06 53.5 51 49.0
Gorai.013G071700 Gossypium raimondii HOM05D000098 ORTHO05D000523 9.0e-06 53.5 51 49.0
Lsat_1_v5_gn_3_43320 Lactuca sativa HOM05D000098 ORTHO05D000523 9.0e-06 53.5 45 53.3
TWI36G0512 Tripterygium wilfordii HOM05D000098 ORTHO05D000523 9.0e-06 53.5 70 42.9


User provided reference genes

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