Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020217 Solanum tuberosum HOM05D001599 ORTHO05D028484 8.0e-35 149.8 73 100.0
Solyc02g093990.4 Solanum lycopersicum HOM05D001599 ORTHO05D005517 3.1e-31 137.9 74 94.6
Sopen02g038640 Solanum pennellii HOM05D001599 ORTHO05D005517 2.7e-30 134.8 73 93.2
Peaxi162Scf00420g00444 Petunia axillaris HOM05D001599 ORTHO05D005517 5.7e-25 117.1 72 81.9
CAN.G473.84 Capsicum annuum HOM05D001599 ORTHO05D005517 2.2e-24 115.2 73 80.8
CAN.G1965.16 Capsicum annuum HOM05D001599 ORTHO05D005517 4.0e-18 94.4 71 67.6
Nitab4.5_0000559g0240 Nicotiana tabacum HOM05D001599 ORTHO05D005517 1.5e-17 92.4 71 67.6
Sopen03g001060 Solanum pennellii HOM05D001599 ORTHO05D000001 1.5e-17 92.4 71 66.2
PGSC0003DMG400013379 Solanum tuberosum HOM05D001599 ORTHO05D005517 1.5e-17 92.4 71 66.2
Nitab4.5_0006819g0010 Nicotiana tabacum HOM05D001599 ORTHO05D005517 3.4e-17 91.3 71 67.6
Solyc03g005050.3 Solanum lycopersicum HOM05D001599 ORTHO05D005517 4.4e-17 90.9 71 64.8
Peaxi162Scf00700g00142 Petunia axillaris HOM05D001599 ORTHO05D005517 1.7e-16 89.0 63 71.4
CDE02G4001 Ceratophyllum demersum HOM05D001599 ORTHO05D005517 5.4e-15 84.0 65 64.6
Nitab4.5_0002887g0050 Nicotiana tabacum HOM05D001599 ORTHO05D005517 5.4e-15 84.0 78 60.3
CiPaw.03G053300 Carya illinoinensis HOM05D001599 ORTHO05D005517 1.6e-14 82.4 63 63.5
Cfa018845 Carpinus fangiana HOM05D001599 ORTHO05D005517 2.7e-14 81.6 65 61.5
CSS0011435 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 4.6e-14 80.9 65 63.1
CSS0021261 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 4.6e-14 80.9 65 63.1
CSS0038544 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 4.6e-14 80.9 65 63.1
CAN.G20.27 Capsicum annuum HOM05D002344 ORTHO05D028484 4.6e-14 80.9 69 60.9
vmacro05942 Vaccinium macrocarpon HOM05D001599 ORTHO05D005517 4.6e-14 80.9 69 59.4
Manes.14G053000 Manihot esculenta HOM05D001599 ORTHO05D005517 7.8e-14 80.1 65 60.0
Thecc.04G031100 Theobroma cacao HOM05D001599 ORTHO05D005517 7.8e-14 80.1 69 55.1
Eucgr.J02317 Eucalyptus grandis HOM05D001599 ORTHO05D005517 1.0e-13 79.7 65 61.5
Eucgr.L02910 Eucalyptus grandis HOM05D001599 ORTHO05D005517 1.0e-13 79.7 65 61.5
Haze_07238 Corylus avellana HOM05D001599 ORTHO05D005517 1.3e-13 79.3 65 61.5
Duzib147G1152 Durio zibethinus HOM05D001599 ORTHO05D005517 1.3e-13 79.3 69 55.1
Hma1.2p1_0279F.1_g112590 Hydrangea macrophylla HOM05D001599 ORTHO05D005517 1.3e-13 79.3 64 60.9
Atru.chr6.2525 Acer truncatum HOM05D001599 ORTHO05D005517 1.7e-13 79.0 69 59.4
Lju41C51T12 Lonicera japonica HOM05D001599 ORTHO05D005517 2.3e-13 78.6 62 67.7
Rhsim10G0008200 Rhododendron simsii HOM05D001599 ORTHO05D005517 2.9e-13 78.2 64 60.9
GSVIVG01008511001 Vitis vinifera HOM05D001599 ORTHO05D005517 3.9e-13 77.8 65 60.0
Actinidia36184 Actinidia chinensis HOM05D001599 ORTHO05D005517 5.0e-13 77.4 70 60.0
COL.COLO4_08740 Corchorus olitorius HOM05D001599 ORTHO05D005517 5.0e-13 77.4 69 53.6
Gohir.D07G234000 Gossypium hirsutum HOM05D001599 ORTHO05D005517 6.6e-13 77.0 69 52.2
Gorai.001G269400 Gossypium raimondii HOM05D001599 ORTHO05D005517 6.6e-13 77.0 69 52.2
Hund13054 Selenicereus undatus HOM05D001599 ORTHO05D005517 6.6e-13 77.0 56 64.3
TPR.G38326 Trifolium pratense HOM05D001599 ORTHO05D005517 6.6e-13 77.0 59 62.7
QL02p071905 Quercus lobata HOM05D001599 ORTHO05D005517 8.6e-13 76.6 69 55.1
Cfa007247 Carpinus fangiana HOM05D001599 ORTHO05D005517 1.1e-12 76.3 63 58.7
TWI12G0332 Tripterygium wilfordii HOM05D001599 ORTHO05D005517 1.1e-12 76.3 51 72.5
GSVIVG01001813001 Vitis vinifera HOM05D001599 ORTHO05D005517 1.1e-12 76.3 62 61.3
Actinidia05908 Actinidia chinensis HOM05D001599 ORTHO05D005517 1.5e-12 75.9 63 61.9
CAN.G1616.5 Capsicum annuum HOM05D002344 ORTHO05D028484 1.9e-12 75.5 69 59.4
PGR083G1002 Punica granatum HOM05D001599 ORTHO05D005517 1.9e-12 75.5 65 64.6
Ciclev10016237m.g Citrus clementina HOM05D001599 ORTHO05D005517 2.5e-12 75.1 62 61.3
Haze_14845 Corylus avellana HOM05D001599 ORTHO05D005517 4.3e-12 74.3 63 58.7
Gohir.A07G226800 Gossypium hirsutum HOM05D001599 ORTHO05D005517 4.3e-12 74.3 69 50.7
MBI08_g17169_MAGBIO Magnolia biondii HOM05D001599 ORTHO05D005517 4.3e-12 74.3 58 65.5
Glyma.16G059400 Glycine max HOM05D001599 ORTHO05D005517 7.3e-12 73.6 69 55.1
Dinv04867 Davidia involucrata HOM05D001599 ORTHO05D005517 1.2e-11 72.8 66 51.5
TAR622G1171 Trochodendron aralioides HOM05D001599 ORTHO05D005517 1.2e-11 72.8 64 59.4
Lj1g0000504 Lotus japonicus HOM05D001599 ORTHO05D005517 1.6e-11 72.4 59 57.6
Aqoxy3G01488 Aquilegia oxysepala HOM05D001599 ORTHO05D005517 2.1e-11 72.0 69 52.2
Phvul.001G095650 Phaseolus vulgaris HOM05D001599 ORTHO05D005517 2.1e-11 72.0 59 57.6
Manes.15G158900 Manihot esculenta HOM05D001599 ORTHO05D005517 2.8e-11 71.6 62 59.7
SalBow1G1605 Salvia bowleyana HOM05D001599 ORTHO05D005517 2.8e-11 71.6 54 66.7
SalBow1G3064 Salvia bowleyana HOM05D001599 ORTHO05D005517 2.8e-11 71.6 54 66.7
TAR374G0283 Trochodendron aralioides HOM05D001599 ORTHO05D005517 2.8e-11 71.6 64 57.8
VMungo1383G2239 Vigna mungo HOM05D001599 ORTHO05D005517 2.8e-11 71.6 54 61.1
arahy.Tifrunner.gnm1.ann1.G7F7H8 Arachis hypogaea HOM05D001599 ORTHO05D005517 3.6e-11 71.2 59 59.3
arahy.Tifrunner.gnm1.ann1.THM6KE Arachis hypogaea HOM05D001599 ORTHO05D005517 3.6e-11 71.2 59 59.3
Nn4g22379 Nelumbo nucifera HOM05D001599 ORTHO05D005517 3.6e-11 71.2 59 61.0
PSO017G0442 Papaver somniferum HOM05D001599 ORTHO05D005517 3.6e-11 71.2 60 60.0
MSTRG.24085 Avicennia marina HOM05D001599 ORTHO05D005517 4.7e-11 70.9 64 56.2
Cpa.g.c33526 Carica papaya HOM05D001599 ORTHO05D005517 4.7e-11 70.9 66 59.1
Glyma.19G088000 Glycine max HOM05D001599 ORTHO05D005517 4.7e-11 70.9 69 52.2
Manes.17G104800 Manihot esculenta HOM05D001599 ORTHO05D005517 4.7e-11 70.9 70 60.0
Psat3g176120 Pisum sativum HOM05D001599 ORTHO05D005517 4.7e-11 70.9 59 59.3
CiPaw.12G040700 Carya illinoinensis HOM05D001599 ORTHO05D005517 6.1e-11 70.5 65 52.3
Ca_18152_v3 Cicer arietinum L. HOM05D001599 ORTHO05D005517 6.1e-11 70.5 59 57.6
Oeu035214.1 Olea europaea HOM05D001599 ORTHO05D005517 6.1e-11 70.5 57 59.6
ATR0686G171 Amborella trichopoda HOM05D001599 ORTHO05D005517 8.0e-11 70.1 64 57.8
PSO478G1423 Papaver somniferum HOM05D001599 ORTHO05D005517 8.0e-11 70.1 60 58.3
Potri.015G093200 Populus trichocarpa HOM05D001599 ORTHO05D005517 8.0e-11 70.1 63 55.6
Cc07_g00650 Coffea canephora HOM05D001599 ORTHO05D005517 1.0e-10 69.7 64 54.7
Sabra15G0114800 Salix brachista HOM05D001599 ORTHO05D005517 1.0e-10 69.7 64 54.7
Sed0016418 Sechium edule HOM05D001599 ORTHO05D005517 1.4e-10 69.3 59 59.3
Sc03g0006650 Simmondsia chinensis HOM05D001599 ORTHO05D005517 1.4e-10 69.3 49 71.4
MSTRG.3089 Avicennia marina HOM05D001599 ORTHO05D005517 1.8e-10 68.9 59 61.0
Migut.H00008 Erythranthe guttata HOM05D001599 ORTHO05D005517 2.3e-10 68.6 68 54.4
Lalb_Chr14g0363201 Lupinus albus HOM05D001599 ORTHO05D005517 2.3e-10 68.6 59 54.2
CSS0029900 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 3.1e-10 68.2 65 49.2
CANSAT64G1266 Cannabis sativa HOM05D001599 ORTHO05D005517 3.1e-10 68.2 61 54.1
Oeu013950.1 Olea europaea HOM05D001599 ORTHO05D005517 4.0e-10 67.8 59 59.3
HPP92_005417 Vanilla planifolia HOM05D001599 ORTHO05D005517 5.2e-10 67.4 65 58.5
TWI39G0440 Tripterygium wilfordii HOM05D001599 ORTHO05D005517 6.8e-10 67.0 50 64.0
Lsat_1_v5_gn_4_185320 Lactuca sativa HOM05D001599 ORTHO05D005517 1.2e-09 66.2 43 69.8
Actinidia08862 Actinidia chinensis HOM05D001386 ORTHO05D004014 1.5e-09 65.9 63 54.0
FvH4_6g53130 Fragaria vesca HOM05D001599 ORTHO05D005517 1.5e-09 65.9 52 57.7
FAN05G1313 Fragaria x ananassa HOM05D001599 ORTHO05D005517 1.5e-09 65.9 52 57.7
FAN09G2664 Fragaria x ananassa HOM05D001599 ORTHO05D005517 1.5e-09 65.9 52 57.7
FAN14G0076 Fragaria x ananassa HOM05D001599 ORTHO05D005517 1.5e-09 65.9 52 57.7
Prupe.3G303400 Prunus persica HOM05D001599 ORTHO05D005517 1.5e-09 65.9 52 59.6
ECA232G4051 Erigeron canadensis HOM05D001599 ORTHO05D005517 2.0e-09 65.5 46 67.4
HanXRQChr09g0256091 Helianthus annuus HOM05D001599 ORTHO05D005517 2.0e-09 65.5 53 58.5
Ciclev10021683m.g Citrus clementina HOM05D001599 ORTHO05D005517 2.6e-09 65.1 61 54.1
MD09G1013900 Malus domestica HOM05D001599 ORTHO05D005517 2.6e-09 65.1 60 56.7
MD17G1014400 Malus domestica HOM05D001599 ORTHO05D005517 2.6e-09 65.1 60 55.0
Ah.10g032570 Amaranthus hybridus HOM05D001599 ORTHO05D005517 3.4e-09 64.7 56 50.0
Potri.012G095700 Populus trichocarpa HOM05D001599 ORTHO05D005517 3.4e-09 64.7 61 50.8
RcHm_v2.0_Chr2g0175001 Rosa chinensis HOM05D001599 ORTHO05D005517 3.4e-09 64.7 52 57.7
ClCG05G013350 Citrullus lanatus HOM05D001599 ORTHO05D005517 4.4e-09 64.3 65 52.3
SGA_v2.0_scaffold18G08213 Striga asiatica HOM05D001599 ORTHO05D005517 4.4e-09 64.3 58 55.2
TAR629G2233 Trochodendron aralioides HOM05D001599 ORTHO05D005517 4.4e-09 64.3 64 53.1
EL10Ac2g03203 Beta vulgaris HOM05D001599 ORTHO05D005517 7.5e-09 63.5 55 52.7
Cpa.g.sc13.145 Carica papaya HOM05D001599 ORTHO05D005517 7.5e-09 63.5 56 51.8
FAN02G0281 Fragaria x ananassa HOM05D001599 ORTHO05D005517 7.5e-09 63.5 49 61.2
Potri.001G333100 Populus trichocarpa HOM05D001599 ORTHO05D005517 7.5e-09 63.5 59 54.2
Sabra16G0214300 Salix brachista HOM05D001599 ORTHO05D005517 9.8e-09 63.2 57 56.1
Oeu013647.1 Olea europaea HOM05D001599 ORTHO05D005517 2.9e-08 61.6 51 60.8
Rhsim12G0173600 Rhododendron simsii HOM05D001599 ORTHO05D005517 2.9e-08 61.6 52 55.8
vmacro16668 Vaccinium macrocarpon HOM05D001599 ORTHO05D005517 3.7e-08 61.2 55 50.9
Gohir.D04G078400 Gossypium hirsutum HOM05D001599 ORTHO05D005517 8.3e-08 60.1 71 45.1
Gorai.012G088300 Gossypium raimondii HOM05D001599 ORTHO05D005517 1.1e-07 59.7 57 49.1
Hund02426 Selenicereus undatus HOM05D001599 ORTHO05D005517 1.1e-07 59.7 53 50.9
unitig_0.g1945 Utricularia gibba HOM05D001599 ORTHO05D005517 1.1e-07 59.7 54 50.0
AUR62029638 Chenopodium quinoa HOM05D001599 ORTHO05D005517 1.4e-07 59.3 53 52.8
MELO3C014867.2 Cucumis melo HOM05D001599 ORTHO05D005517 1.4e-07 59.3 67 50.7
QL05p062226 Quercus lobata HOM05D001599 ORTHO05D005517 1.9e-07 58.9 65 46.2
RcHm_v2.0_Chr7g0190491 Rosa chinensis HOM05D001599 ORTHO05D005517 1.9e-07 58.9 50 54.0
Gorai.001G060000 Gossypium raimondii HOM05D001599 ORTHO05D005517 5.4e-07 57.4 56 46.4
MD06G1144200 Malus domestica HOM05D001599 ORTHO05D005517 5.4e-07 57.4 50 54.0
SHI43493 Sapria himalayana HOM05D001599 ORTHO05D005517 5.4e-07 57.4 61 50.8
QL10p004219 Quercus lobata HOM05D001599 ORTHO05D005517 7.0e-07 57.0 65 44.6
Gohir.A05G339900 Gossypium hirsutum HOM05D001599 ORTHO05D005517 9.2e-07 56.6 56 51.8
Lj9A477T58 Lonicera japonica HOM05D001599 ORTHO05D005517 9.2e-07 56.6 56 50.0
Os08g0118900 Oryza sativa ssp. japonica HOM05D001599 ORTHO05D005517 9.2e-07 56.6 58 48.3
CsaV3_3G027210 Cucumis sativus L. HOM05D001599 ORTHO05D005517 1.2e-06 56.2 67 49.3
Gohir.D07G056500 Gossypium hirsutum HOM05D001599 ORTHO05D005517 1.2e-06 56.2 56 44.6
Dinv33355 Davidia involucrata HOM05D001599 ORTHO05D005517 1.6e-06 55.8 45 62.2
QL10p004214 Quercus lobata HOM05D001599 ORTHO05D005517 2.0e-06 55.5 64 45.3
THA.LOC104802376 Tarenaya hassleriana HOM05D001599 ORTHO05D005517 2.0e-06 55.5 43 58.1
C03p39370 Brassica napus HOM05D001599 ORTHO05D005517 3.5e-06 54.7 53 50.9
QL05p062231 Quercus lobata HOM05D001599 ORTHO05D005517 4.6e-06 54.3 64 43.8
Ah.11g044850 Amaranthus hybridus HOM05D001599 ORTHO05D005517 6.0e-06 53.9 77 37.7
BolC3t16206H Brassica oleracea HOM05D001599 ORTHO05D005517 6.0e-06 53.9 53 50.9
AUR62025918 Chenopodium quinoa HOM05D001599 ORTHO05D005517 7.8e-06 53.5 39 59.0


User provided reference genes

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