Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 1.5e-141 506.1 255 100.0
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 1.1e-136 490.0 255 96.5
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 5.6e-136 487.6 255 95.7
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 6.2e-127 457.6 255 91.0
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.6e-122 443.0 257 88.3
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.0e-121 440.3 257 87.5
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 9.7e-120 433.7 258 86.4
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 3.0e-97 359.0 255 72.5
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 1.8e-94 349.7 255 70.6
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 5.9e-93 344.7 286 65.0
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 7.7e-93 344.4 254 69.7
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 1.0e-92 344.0 249 69.9
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 1.5e-91 340.1 244 71.3
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 1.9e-91 339.7 255 68.6
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 1.9e-91 339.7 256 68.0
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 3.2e-91 339.0 250 68.0
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 5.5e-91 338.2 246 69.5
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 7.2e-91 337.8 237 71.7
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 1.2e-90 337.0 263 68.1
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 2.1e-90 336.3 247 70.0
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 6.1e-90 334.7 258 66.3
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 1.0e-89 334.0 248 70.6
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 2.3e-89 332.8 254 67.7
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 2.3e-89 332.8 245 69.0
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 6.8e-89 331.3 257 65.8
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 1.5e-88 330.1 240 70.8
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 3.4e-88 328.9 237 71.3
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 3.4e-88 328.9 256 67.6
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 3.4e-88 328.9 253 66.4
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 5.7e-88 328.2 255 65.1
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 7.5e-88 327.8 254 66.9
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 9.7e-88 327.4 256 65.6
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 1.3e-87 327.0 240 69.6
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 1.3e-87 327.0 244 69.7
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 1.3e-87 327.0 244 66.4
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.7e-87 326.6 249 68.7
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 4.8e-87 325.1 245 66.9
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 1.1e-86 323.9 239 68.6
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 1.1e-86 323.9 254 65.0
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 1.8e-86 323.2 258 65.9
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 1.8e-86 323.2 239 67.4
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 7.0e-86 321.2 250 66.8
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 9.1e-86 320.9 244 66.8
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 9.1e-86 320.9 232 67.7
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 9.1e-86 320.9 243 67.5
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.6e-85 320.1 239 69.0
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 2.7e-85 319.3 240 67.5
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 3.5e-85 318.9 256 64.5
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 4.5e-85 318.5 240 67.5
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 4.5e-85 318.5 240 67.1
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 7.7e-85 317.8 258 65.5
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 7.7e-85 317.8 258 64.7
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 1.7e-84 316.6 244 64.3
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 5.0e-84 315.1 287 57.8
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 6.5e-84 314.7 237 69.6
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 1.1e-83 313.9 281 61.2
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 1.5e-83 313.5 244 67.2
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 1.6e-82 310.1 244 65.2
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 1.0e-81 307.4 245 64.5
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 1.4e-81 307.0 235 67.2
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 8.8e-81 304.3 281 59.8
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 2.0e-80 303.1 280 59.6
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 4.4e-80 302.0 250 60.8
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 5.7e-80 301.6 262 59.9
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 7.5e-80 301.2 280 59.6
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 7.5e-80 301.2 248 63.7
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 2.2e-79 299.7 255 60.0
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 2.2e-79 299.7 255 60.0
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 6.3e-79 298.1 251 60.6
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 1.1e-78 297.4 244 63.1
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 1.8e-78 296.6 244 63.1
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 3.1e-78 295.8 266 59.4
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 3.1e-78 295.8 217 67.3
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 1.2e-77 293.9 257 58.0
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 1.6e-77 293.5 255 60.0
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 1.6e-77 293.5 251 60.6
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 1.6e-77 293.5 257 58.8
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 1.6e-77 293.5 257 58.8
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 2.7e-77 292.7 275 58.5
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 1.3e-76 290.4 256 58.2
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 2.9e-76 289.3 237 61.2
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 1.5e-75 287.0 270 58.1
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 5.5e-75 285.0 232 65.1
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.6e-74 283.5 254 57.9
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 3.0e-73 279.3 260 55.8
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 6.8e-73 278.1 261 55.9
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 1.2e-72 277.3 295 52.2
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 2.0e-72 276.6 260 56.2
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 2.6e-72 276.2 274 56.2
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 1.1e-70 270.8 235 60.0
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 4.1e-70 268.9 246 53.7
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 7.0e-70 268.1 282 53.9
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 6.6e-68 261.5 247 53.8
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 3.1e-65 252.7 233 57.9
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 4.0e-65 252.3 246 58.5
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 3.7e-63 245.7 189 66.1
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 8.3e-63 244.6 250 52.0
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 1.2e-56 224.2 178 64.0
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 4.1e-54 215.7 225 52.9
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 2.1e-50 203.4 272 44.1
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 2.1e-50 203.4 262 42.7
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 5.8e-48 195.3 132 68.2
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 1.7e-47 193.7 260 47.7
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 9.6e-43 177.9 125 67.2
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 1.5e-40 170.6 168 48.8
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 5.8e-40 168.7 233 47.2
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 2.2e-39 166.8 257 42.0
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 6.2e-34 148.7 121 56.2
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 6.9e-25 118.6 149 51.0
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 4.5e-24 115.9 133 51.9
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 1.2e-21 107.8 140 39.3
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 8.1e-18 95.1 110 55.5
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 3.4e-16 89.7 108 49.1
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 1.3e-10 71.2 46 69.6
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.5e-08 62.8 63 44.4
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.7e-07 60.8 38 76.3


User provided reference genes

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