Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 5.4e-122 441.0 228 100.0
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 7.8e-121 437.2 228 99.1
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.0e-120 436.8 228 98.7
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 3.8e-115 418.3 228 93.4
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.9e-112 408.3 228 91.7
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.4e-108 395.2 228 89.9
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 9.9e-108 393.7 228 89.5
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 6.4e-107 391.0 228 89.0
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.4e-106 389.0 215 92.1
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 5.4e-106 387.9 228 86.8
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 6.0e-105 384.4 228 86.8
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.0e-104 383.6 228 83.8
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.3e-104 382.5 228 85.5
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 2.3e-104 382.5 228 85.5
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.0e-104 382.1 228 86.0
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 6.6e-104 380.9 228 86.0
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 8.7e-104 380.6 215 91.2
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.1e-103 380.2 228 84.2
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.9e-103 379.4 228 84.6
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 2.5e-103 379.0 228 85.5
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.5e-103 379.0 228 84.6
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.3e-103 378.6 228 85.1
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 3.3e-103 378.6 228 85.1
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 3.3e-103 378.6 228 82.5
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.6e-103 377.1 228 86.0
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.6e-102 376.3 228 84.6
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 2.1e-102 375.9 228 85.5
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.1e-102 375.9 229 85.6
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 2.8e-102 375.6 228 85.5
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 6.2e-102 374.4 228 83.8
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 85.0
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-101 373.6 228 83.3
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.1e-101 373.6 228 85.1
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.1e-101 373.6 228 85.5
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.1e-101 373.6 228 83.3
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.4e-101 373.2 230 83.5
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.4e-101 373.2 228 82.9
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.4e-101 372.5 228 83.8
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.1e-101 372.1 229 84.3
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 4.0e-101 371.7 230 84.8
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 5.3e-101 371.3 228 83.3
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 6.9e-101 370.9 230 83.5
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 6.9e-101 370.9 229 84.7
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 6.9e-101 370.9 227 83.3
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 9.0e-101 370.5 228 82.9
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.5e-100 369.8 228 82.9
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.5e-100 369.8 228 83.3
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.5e-100 369.8 230 83.0
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.5e-100 369.8 228 81.6
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 83.3
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 3.4e-100 368.6 228 82.5
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 4.5e-100 368.2 227 83.3
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 4.5e-100 368.2 230 82.6
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 4.5e-100 368.2 228 81.6
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 82.8
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 5.8e-100 367.9 230 82.6
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 7.6e-100 367.5 225 84.4
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 9.9e-100 367.1 227 82.8
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.3e-99 366.7 228 81.6
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.7e-99 366.3 228 80.3
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.7e-99 366.3 228 82.9
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 2.9e-99 365.5 228 80.7
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 2.9e-99 365.5 228 82.0
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 3.8e-99 365.2 220 84.5
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 3.8e-99 365.2 228 81.6
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 4.9e-99 364.8 228 81.6
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 6.4e-99 364.4 215 86.5
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 8.4e-99 364.0 228 81.1
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 8.4e-99 364.0 229 82.1
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.4e-98 363.2 228 81.1
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 2.4e-98 362.5 228 80.7
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 3.2e-98 362.1 234 80.3
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 7.1e-98 360.9 228 78.9
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.1e-97 359.4 219 85.8
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 2.1e-97 359.4 226 81.4
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 4.6e-97 358.2 228 79.8
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.0e-96 357.1 226 81.9
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.8e-96 356.3 225 82.2
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 3.0e-96 355.5 215 81.4
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 3.9e-96 355.1 216 83.8
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 6.7e-96 354.4 228 80.3
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 6.7e-96 354.4 228 80.3
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 6.7e-96 354.4 229 82.1
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 8.7e-96 354.0 228 80.3
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.1e-95 353.6 228 80.3
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.9e-95 352.8 218 83.0
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 2.5e-95 352.4 218 81.7
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 3.3e-95 352.1 228 78.5
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.3e-95 352.1 228 78.9
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 4.3e-95 351.7 228 79.8
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 7.4e-95 350.9 216 83.3
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 9.6e-95 350.5 228 78.5
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.3e-94 350.1 208 86.1
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.3e-94 350.1 218 81.7
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.6e-94 349.7 229 80.8
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.6e-94 349.7 215 84.2
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 3.7e-94 348.6 218 82.1
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 4.8e-94 348.2 215 82.8
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 1.4e-93 346.7 215 80.9
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.4e-93 346.7 215 80.9
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.1e-93 345.5 207 84.5
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 5.3e-93 344.7 228 81.1
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 6.9e-93 344.4 226 79.2
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.5e-92 343.2 228 76.8
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 2.6e-92 342.4 228 76.3
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 5.8e-92 341.3 266 68.8
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 7.6e-92 340.9 206 83.5
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.0e-91 340.5 215 81.4
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.0e-91 340.5 192 90.6
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.2e-91 339.3 207 82.1
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.4e-90 336.7 215 78.6
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.8e-88 329.7 215 79.1
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 3.9e-88 328.6 229 74.7
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.5e-87 325.9 203 83.7
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.4e-85 319.3 213 76.1
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 6.9e-85 317.8 228 74.1
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 2.0e-84 316.2 196 82.1
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 5.5e-82 308.1 191 82.2
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.3e-79 298.5 196 77.0
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 5.9e-76 288.1 215 68.8
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.1e-74 283.9 183 80.9
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 9.4e-74 280.8 221 66.5
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 7.9e-73 277.7 164 85.4
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.9e-72 275.4 230 67.4
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 8.8e-72 274.2 225 65.8
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.7e-67 260.0 193 73.1
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 2.9e-67 259.2 193 66.8
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 1.4e-66 256.9 228 64.5
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 1.9e-66 256.5 197 70.6
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.5e-66 256.1 164 77.4
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.0e-64 250.8 160 78.1
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 9.7e-63 244.2 150 80.0
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 5.3e-61 238.4 238 54.2
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 3.5e-60 235.7 154 77.3
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 3.2e-58 229.2 156 78.2
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 8.2e-54 214.5 216 53.2
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.4e-53 213.0 132 80.3
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.5e-50 203.8 194 60.3
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 1.0e-40 171.0 100 81.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 5.2e-40 168.7 109 79.8
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.1e-37 159.5 115 72.2
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 5.7e-31 138.7 92 75.0
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.4e-29 134.0 109 65.1
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.0e-28 130.2 88 75.0
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 1.2e-25 120.9 135 53.3
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.3e-24 116.7 113 61.1
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 1.3e-19 100.9 63 74.6
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 7.3e-18 95.1 51 92.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.8e-17 93.2 98 54.1
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 7.1e-13 78.6 71 64.8
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 5.1e-11 72.4 208 28.8
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.1e-10 71.2 114 42.1
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 3.6e-09 66.2 68 52.9
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.3e-08 63.5 63 57.1
DCAR_020602 Daucus carota HOM05D000223 ORTHO05D008670 4.9e-06 55.8 152 30.3
SGA_v2.0_scaffold131G34397 Striga asiatica HOM05D000083 ORTHO05D000196 8.4e-06 55.1 107 33.6


User provided reference genes

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