Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 8.8e-53 209.9 99 100.0
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 8.0e-22 107.1 93 58.1
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 6.8e-21 104.0 107 56.1
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 8.9e-21 103.6 99 53.5
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 1.5e-20 102.8 105 52.4
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 1.5e-20 102.8 99 52.5
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 2.0e-20 102.4 109 52.3
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 2.6e-20 102.1 113 49.6
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 4.4e-20 101.3 99 57.6
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 5.8e-20 100.9 101 51.5
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 1.7e-19 99.4 110 52.7
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 2.2e-19 99.0 114 53.5
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 2.2e-19 99.0 108 50.9
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.2e-19 99.0 111 51.4
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 2.2e-19 99.0 99 58.6
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.7e-19 98.2 100 55.0
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 3.7e-19 98.2 61 73.8
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 3.7e-19 98.2 65 73.8
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 4.9e-19 97.8 57 78.9
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 4.9e-19 97.8 113 50.4
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 4.9e-19 97.8 104 51.0
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 4.9e-19 97.8 108 51.9
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 6.4e-19 97.4 111 49.5
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 6.4e-19 97.4 111 49.5
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 6.4e-19 97.4 111 51.4
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 6.4e-19 97.4 54 81.5
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 6.4e-19 97.4 56 80.4
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 8.3e-19 97.1 55 80.0
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 8.3e-19 97.1 76 65.8
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 8.3e-19 97.1 67 68.7
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 8.3e-19 97.1 67 68.7
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 8.3e-19 97.1 67 68.7
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 1.1e-18 96.7 61 72.1
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 1.4e-18 96.3 95 53.7
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 1.9e-18 95.9 52 82.7
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 1.9e-18 95.9 112 50.0
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 1.9e-18 95.9 52 82.7
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 1.9e-18 95.9 61 72.1
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 1.9e-18 95.9 76 63.2
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 1.9e-18 95.9 52 82.7
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 1.9e-18 95.9 61 72.1
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 1.9e-18 95.9 95 54.7
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 1.9e-18 95.9 95 52.6
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.4e-18 95.5 111 48.6
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 2.4e-18 95.5 108 52.8
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 4.1e-18 94.7 61 72.1
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 4.1e-18 94.7 70 65.7
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 4.1e-18 94.7 52 80.8
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 5.4e-18 94.4 64 67.2
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 5.4e-18 94.4 61 70.5
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 7.0e-18 94.0 95 51.6
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 7.0e-18 94.0 61 72.1
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 7.0e-18 94.0 108 50.0
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 7.0e-18 94.0 60 73.3
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 9.2e-18 93.6 54 79.6
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 1.2e-17 93.2 64 67.2
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 1.2e-17 93.2 61 70.5
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 1.2e-17 93.2 52 82.7
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 2.0e-17 92.4 125 44.8
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 2.0e-17 92.4 69 60.9
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 2.7e-17 92.0 101 54.5
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 2.7e-17 92.0 77 59.7
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 2.7e-17 92.0 97 50.5
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 3.5e-17 91.7 95 53.7
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 4.6e-17 91.3 52 75.0
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 4.6e-17 91.3 66 62.1
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 7.8e-17 90.5 113 50.4
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 7.8e-17 90.5 113 50.4
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 7.8e-17 90.5 113 50.4
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 7.8e-17 90.5 61 63.9
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 1.3e-16 89.7 97 50.5
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 2.3e-16 89.0 62 69.4
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 2.3e-16 89.0 58 72.4
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 3.0e-16 88.6 54 70.4
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 3.9e-16 88.2 91 54.9
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 5.0e-16 87.8 66 59.1
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 5.0e-16 87.8 108 48.1
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 5.0e-16 87.8 113 49.6
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 5.0e-16 87.8 111 48.6
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 5.0e-16 87.8 50 78.0
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 6.6e-16 87.4 112 47.3
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 8.6e-16 87.0 49 79.6
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 8.6e-16 87.0 51 74.5
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 1.1e-15 86.7 52 75.0
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 1.5e-15 86.3 49 75.5
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 1.5e-15 86.3 49 75.5
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 1.5e-15 86.3 49 75.5
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 1.9e-15 85.9 50 76.0
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 1.9e-15 85.9 52 71.2
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 3.3e-15 85.1 50 76.0
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 3.3e-15 85.1 50 76.0
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 3.3e-15 85.1 50 76.0
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 3.3e-15 85.1 50 76.0
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 3.3e-15 85.1 50 76.0
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 3.3e-15 85.1 50 76.0
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 4.3e-15 84.7 50 74.0
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 7.3e-15 84.0 54 68.5
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 9.5e-15 83.6 51 72.5
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 9.5e-15 83.6 97 50.5
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 1.2e-14 83.2 67 58.2
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 1.6e-14 82.8 104 46.2
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 1.6e-14 82.8 85 50.6
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 2.8e-14 82.0 49 73.5
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 2.8e-14 82.0 50 68.0
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 2.8e-14 82.0 96 46.9
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 3.6e-14 81.6 100 47.0
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 4.7e-14 81.3 61 60.7
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 8.1e-14 80.5 48 72.9
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 1.1e-13 80.1 49 69.4
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 1.8e-13 79.3 49 67.3
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 1.8e-13 79.3 97 46.4
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 3.1e-13 78.6 46 71.7
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 1.5e-12 76.3 91 44.0
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 2.6e-12 75.5 103 43.7
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 1.7e-11 72.8 68 52.9
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 1.3e-08 63.2 51 52.9


User provided reference genes

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