Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.8e-80 302.0 161 100.0
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 7.1e-76 287.3 161 91.9
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 4.7e-72 274.6 161 91.3
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 7.9e-51 204.1 173 61.8
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.3e-49 198.4 173 60.7
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 7.6e-38 161.0 165 55.2
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.2e-37 159.5 193 46.1
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 2.2e-37 159.5 193 46.1
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.2e-36 155.2 200 44.5
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.6e-35 153.3 192 45.3
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.3e-32 143.7 203 41.4
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 2.4e-31 139.4 142 52.8
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.0e-29 134.0 193 40.9
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 1.7e-29 133.3 149 51.7
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.2e-28 128.6 141 59.6
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.5e-28 128.3 129 62.8
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 6.7e-26 121.3 148 52.0
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 8.8e-26 120.9 131 49.6
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 1.1e-25 120.6 121 52.9
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 1.5e-25 120.2 123 51.2
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 7.4e-25 117.9 134 44.8
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 7.4e-25 117.9 139 54.7
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.3e-24 117.1 119 50.4
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 2.2e-24 116.3 121 54.5
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 2.8e-24 115.9 123 54.5
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 3.7e-24 115.5 202 41.1
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 4.8e-24 115.2 129 50.4
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 8.2e-24 114.4 121 52.1
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 1.8e-23 113.2 122 48.4
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 1.8e-23 113.2 145 46.9
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.8e-23 113.2 193 44.0
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 2.4e-23 112.8 124 46.0
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 2.4e-23 112.8 115 53.0
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.1e-23 112.5 195 42.1
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 5.3e-23 111.7 124 50.0
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 6.9e-23 111.3 122 50.8
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 9.1e-23 110.9 119 55.5
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 1.2e-22 110.5 120 50.0
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.0e-22 109.8 122 48.4
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 2.0e-22 109.8 122 49.2
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 3.4e-22 109.0 120 47.5
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 4.5e-22 108.6 126 48.4
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 5.9e-22 108.2 122 49.2
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 5.9e-22 108.2 125 47.2
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 5.9e-22 108.2 134 56.0
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 7.7e-22 107.8 119 56.3
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.3e-21 107.1 129 46.5
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.3e-21 107.1 122 51.6
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.3e-21 107.1 157 42.0
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.7e-21 106.7 160 39.4
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 2.2e-21 106.3 126 46.0
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 2.2e-21 106.3 126 46.0
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 2.9e-21 105.9 119 46.2
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.8e-21 105.5 128 48.4
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 3.8e-21 105.5 120 48.3
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 6.5e-21 104.8 122 46.7
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 6.5e-21 104.8 129 45.7
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.1e-20 104.0 147 52.4
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.4e-20 103.6 116 46.6
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.4e-20 103.6 112 50.0
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 2.5e-20 102.8 117 44.4
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 3.2e-20 102.4 129 45.7
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 4.2e-20 102.1 127 50.4
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 5.5e-20 101.7 121 50.4
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 5.5e-20 101.7 126 52.4
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 7.2e-20 101.3 130 45.4
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.6e-19 100.1 117 50.4
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 2.1e-19 99.8 156 46.2
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.7e-19 99.4 122 45.1
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 4.7e-19 98.6 129 52.7
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 7.9e-19 97.8 131 46.6
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 7.9e-19 97.8 131 46.6
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 7.9e-19 97.8 131 46.6
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.4e-18 97.1 136 46.3
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.4e-18 97.1 119 44.5
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 1.8e-18 96.7 131 47.3
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.0e-18 95.9 122 43.4
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 3.9e-18 95.5 133 51.1
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 3.9e-18 95.5 171 43.9
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 3.9e-18 95.5 117 48.7
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 5.1e-18 95.1 151 41.1
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 5.1e-18 95.1 117 45.3
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 8.8e-18 94.4 131 44.3
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.1e-17 94.0 121 52.1
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.0e-17 93.2 131 42.7
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 2.6e-17 92.8 137 35.8
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.6e-17 92.8 131 42.7
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.3e-17 92.4 122 51.6
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.3e-17 92.4 122 51.6
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 7.4e-17 91.3 133 39.1
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 9.7e-17 90.9 117 51.3
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 1.7e-16 90.1 152 38.8
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 2.8e-16 89.4 123 38.2
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.8e-16 89.4 126 51.6
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 3.7e-16 89.0 129 43.4
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 1.1e-15 87.4 131 40.5
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 1.4e-15 87.0 171 41.5
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 5.3e-15 85.1 136 45.6
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 6.9e-15 84.7 129 47.3
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 6.9e-15 84.7 148 42.6
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 6.9e-15 84.7 148 42.6
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 6.9e-15 84.7 148 42.6
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 9.1e-15 84.3 139 40.3
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 1.5e-14 83.6 131 46.6
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.5e-14 83.6 147 42.2
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 2.0e-14 83.2 170 40.0
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 2.0e-14 83.2 161 41.6
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 4.5e-14 82.0 148 36.5
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 4.5e-14 82.0 124 49.2
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 7.7e-14 81.3 171 35.7
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.0e-13 80.9 129 45.7
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 1.0e-13 80.9 127 41.7
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 2.2e-13 79.7 163 41.1
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 5.0e-13 78.6 129 45.0
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 6.5e-13 78.2 140 37.1
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 5.5e-12 75.1 107 52.3
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 5.5e-12 75.1 125 33.6
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 1.2e-11 73.9 133 40.6
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 1.6e-11 73.6 124 37.9
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 2.1e-11 73.2 156 31.4
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 4.7e-11 72.0 149 35.6
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 1.0e-10 70.9 121 40.5
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 1.1e-09 67.4 109 48.6
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 1.5e-09 67.0 59 52.5
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.3e-08 63.9 143 32.2
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 8.2e-08 61.2 142 35.9
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.4e-07 60.5 165 30.3
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 4.1e-07 58.9 53 50.9
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.1e-07 58.9 89 39.3
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 1.2e-06 57.4 71 45.1


User provided reference genes

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