Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 3.1e-81 305.1 153 100.0
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 1.7e-79 299.3 153 98.0
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 3.4e-72 275.0 151 93.4
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 7.7e-72 273.9 153 88.9
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 2.4e-65 252.3 154 83.8
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 8.5e-55 217.2 147 75.5
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 5.2e-52 208.0 146 71.2
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 6.8e-52 207.6 148 69.6
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 4.4e-51 204.9 124 77.4
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 5.7e-51 204.5 128 74.2
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 9.8e-51 203.8 145 70.3
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 3.7e-50 201.8 124 76.6
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 1.6e-48 196.4 121 74.4
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 1.6e-48 196.4 150 68.7
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 2.0e-48 196.1 152 61.8
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.0e-48 196.1 148 64.9
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 5.9e-48 194.5 124 75.8
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 7.7e-48 194.1 124 75.0
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 1.0e-47 193.7 124 72.6
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 1.0e-47 193.7 124 74.2
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 6.5e-47 191.0 131 70.2
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 8.5e-47 190.7 122 73.8
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 2.5e-46 189.1 132 68.9
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 1.6e-45 186.4 124 71.0
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 2.1e-45 186.0 148 61.5
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 3.6e-45 185.3 122 72.1
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 3.6e-45 185.3 124 71.0
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 6.1e-45 184.5 124 71.0
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 1.0e-44 183.7 146 64.4
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 1.8e-44 183.0 145 63.4
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 4.0e-44 181.8 143 63.6
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 5.2e-44 181.4 123 69.9
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 6.8e-44 181.0 149 61.1
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 1.2e-43 180.3 146 62.3
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 1.2e-43 180.3 123 71.5
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 1.5e-43 179.9 146 62.3
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 2.6e-43 179.1 123 69.1
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 2.6e-43 179.1 123 69.1
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 4.4e-43 178.3 152 59.9
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 9.8e-43 177.2 124 70.2
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 1.7e-42 176.4 124 68.5
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 2.2e-42 176.0 123 67.5
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 2.2e-42 176.0 129 66.7
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 3.7e-42 175.3 150 60.7
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 4.9e-42 174.9 127 69.3
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 4.9e-42 174.9 124 66.1
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 8.3e-42 174.1 160 59.4
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 1.1e-41 173.7 122 65.6
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 1.8e-41 172.9 123 66.7
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 1.8e-41 172.9 143 62.2
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 3.1e-41 172.2 145 61.4
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 5.4e-41 171.4 123 65.0
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 1.2e-40 170.2 145 59.3
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 2.0e-40 169.5 123 63.4
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 3.5e-40 168.7 109 71.6
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 4.5e-40 168.3 123 64.2
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 5.9e-40 167.9 156 55.1
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 7.7e-40 167.5 122 63.9
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 1.7e-39 166.4 120 65.8
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 2.3e-39 166.0 130 60.0
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 2.3e-39 166.0 130 60.0
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 2.9e-39 165.6 147 58.5
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 3.8e-39 165.2 120 65.8
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 1.1e-38 163.7 148 54.7
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 2.5e-38 162.5 147 56.5
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 2.5e-38 162.5 145 57.2
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 4.3e-38 161.8 148 56.1
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 5.6e-38 161.4 154 53.2
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 7.3e-38 161.0 146 55.5
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 7.3e-38 161.0 129 58.1
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 9.5e-38 160.6 147 56.5
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 2.1e-37 159.5 146 57.5
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 2.1e-37 159.5 150 53.3
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 3.6e-37 158.7 148 56.1
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 3.6e-37 158.7 151 55.6
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 3.6e-37 158.7 145 58.6
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 8.0e-37 157.5 147 55.8
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 8.0e-37 157.5 150 55.3
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 1.0e-36 157.1 145 56.6
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 1.0e-36 157.1 143 55.9
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 1.4e-36 156.8 151 55.0
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 1.4e-36 156.8 151 55.0
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 1.4e-36 156.8 151 55.0
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 1.4e-36 156.8 126 59.5
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 2.3e-36 156.0 90 78.9
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 8.9e-36 154.1 119 64.7
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 5.7e-35 151.4 106 69.8
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 7.5e-35 151.0 122 59.8
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 1.7e-34 149.8 123 61.8
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 1.7e-34 149.8 123 61.8
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 6.4e-34 147.9 155 52.9
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 6.4e-34 147.9 122 57.4
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 1.4e-33 146.7 109 63.3
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 5.4e-33 144.8 143 51.7
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 9.2e-33 144.1 123 55.3
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 1.2e-32 143.7 125 55.2
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 1.0e-31 140.6 150 55.3
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 8.3e-26 120.9 97 62.9
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 2.7e-24 115.9 87 58.6
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.3e-23 113.6 140 42.1
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 2.5e-22 109.4 84 65.5
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 7.8e-16 87.8 77 59.7
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 2.8e-13 79.3 67 56.7
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 3.6e-13 79.0 57 66.7
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 4.7e-13 78.6 57 68.4
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 8.1e-13 77.8 111 39.6
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.1e-09 67.4 111 34.2
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 9.2e-09 64.3 105 36.2
Pp3c7_26210 Physcomitrium patens HOM05D021038 ORTHO05D009018 4.3e-06 55.5 109 33.0
Pp3c1_6510 Physcomitrium patens HOM05D021038 ORTHO05D009018 9.6e-06 54.3 109 32.1


User provided reference genes

Program Settings