Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 4.6e-135 484.6 246 100.0
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 5.3e-131 471.1 245 97.1
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 6.4e-129 464.2 245 95.5
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 3.3e-117 425.2 249 87.1
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.2e-112 408.7 229 88.2
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.9e-110 401.7 222 88.3
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 4.3e-109 398.3 224 87.9
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 6.5e-97 357.8 246 71.5
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.4e-94 350.1 243 70.4
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.8e-94 349.7 243 69.5
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 4.4e-93 345.1 219 75.8
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.4e-91 340.1 244 68.9
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 5.3e-91 338.2 245 69.4
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 9.1e-91 337.4 243 67.9
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 9.1e-91 337.4 245 66.1
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.6e-90 336.7 242 68.2
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 4.5e-90 335.1 239 66.9
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 4.5e-90 335.1 243 67.9
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 5.9e-90 334.7 242 66.9
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.3e-89 333.6 242 66.5
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.2e-89 332.8 234 66.7
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 2.9e-89 332.4 244 65.2
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 3.8e-89 332.0 242 66.1
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 8.5e-89 330.9 242 66.1
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 8.5e-89 330.9 250 65.6
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-88 330.5 242 66.1
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.1e-88 330.5 241 66.4
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 5.5e-88 328.2 244 65.6
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 7.2e-88 327.8 240 66.2
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.6e-87 326.6 259 64.1
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 4.7e-87 325.1 242 66.9
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.0e-86 323.9 241 65.1
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.4e-86 323.6 237 66.2
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-86 323.2 245 63.7
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.8e-86 323.2 238 65.1
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 2.3e-86 322.8 243 64.2
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 3.0e-86 322.4 219 71.7
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 5.2e-86 321.6 244 65.2
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 5.2e-86 321.6 242 63.6
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 8.8e-86 320.9 228 68.0
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.5e-85 320.1 237 65.4
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.5e-85 320.1 237 65.8
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 2.6e-85 319.3 246 63.8
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 3.3e-85 318.9 239 64.4
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 3.3e-85 318.9 237 63.3
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 4.4e-85 318.5 246 64.6
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.5e-85 317.8 247 61.9
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.3e-84 317.0 242 62.4
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 2.8e-84 315.8 264 59.5
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 2.8e-84 315.8 244 62.3
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 6.3e-84 314.7 242 63.2
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.4e-83 313.5 244 61.9
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.4e-83 312.8 244 59.8
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 9.1e-83 310.8 242 62.4
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 9.1e-83 310.8 222 67.1
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.0e-82 309.7 243 61.3
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 2.0e-82 309.7 241 61.4
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 7.7e-82 307.8 245 62.4
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.3e-81 307.0 244 60.2
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.7e-81 306.6 281 57.3
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.5e-80 303.5 244 60.7
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.9e-80 303.1 243 62.1
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 3.2e-80 302.4 244 61.5
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.2e-80 302.0 222 65.8
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 4.2e-80 302.0 238 60.5
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 9.4e-80 300.8 245 60.8
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 9.4e-80 300.8 261 58.6
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.6e-79 300.1 245 57.1
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 3.0e-78 295.8 242 58.3
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.4e-77 292.0 322 50.3
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.2e-76 289.7 242 57.9
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.8e-75 286.6 273 53.5
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.8e-75 286.6 278 56.1
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.1e-75 285.8 217 61.8
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 4.1e-75 285.4 273 53.5
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 7.0e-75 284.6 272 54.4
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.7e-74 282.7 242 58.3
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.7e-74 282.7 245 56.7
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.7e-74 282.7 240 58.3
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.0e-73 280.8 243 58.4
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.3e-73 280.4 246 54.5
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.3e-73 280.4 233 58.8
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.9e-73 279.3 311 48.2
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.5e-73 278.1 239 58.6
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 1.9e-72 276.6 263 54.4
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-72 276.2 242 57.4
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 7.2e-72 274.6 222 58.6
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 9.4e-72 274.2 323 47.1
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.1e-71 273.1 246 56.9
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 8.0e-71 271.2 243 56.8
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 8.0e-71 271.2 243 56.8
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-70 270.4 246 56.5
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.8e-70 270.0 246 56.1
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 2.3e-70 269.6 241 55.6
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-70 269.6 246 56.1
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.3e-70 269.6 246 56.1
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 3.0e-70 269.2 243 56.4
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 5.2e-70 268.5 246 55.7
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.8e-70 268.1 239 53.1
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.5e-69 266.9 242 56.2
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 2.0e-69 266.5 241 56.4
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 4.4e-69 265.4 223 59.2
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 4.4e-69 265.4 220 60.0
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 9.8e-69 264.2 265 54.0
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.7e-68 263.5 242 55.4
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 2.8e-68 262.7 241 55.6
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 3.7e-68 262.3 238 56.7
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.7e-68 262.3 247 55.9
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 4.9e-68 261.9 242 55.0
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-67 260.8 244 54.9
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-67 260.0 214 59.3
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.8e-67 260.0 245 52.7
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 5.4e-67 258.5 219 57.1
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.2e-67 257.7 247 54.7
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 9.2e-67 257.7 223 57.4
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.6e-66 256.9 244 52.0
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.9e-65 252.7 213 56.8
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.0e-65 251.9 245 51.0
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 5.6e-64 248.4 206 59.2
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 2.1e-63 246.5 181 65.7
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 5.2e-62 241.9 179 63.7
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 8.9e-62 241.1 179 63.1
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 2.0e-61 240.0 178 66.9
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.9e-60 236.1 220 53.6
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.0e-57 227.6 198 57.1
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.5e-53 213.8 217 50.7
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.4e-53 212.2 218 50.9
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-52 210.7 164 63.4
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 2.2e-52 209.9 219 50.7
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.9e-51 206.8 202 51.5
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 4.1e-51 205.7 202 51.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 5.4e-51 205.3 202 52.0
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.0e-51 204.9 209 50.7
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 7.0e-51 204.9 202 51.0
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.6e-50 203.8 202 51.5
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 4.6e-50 202.2 238 48.3
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.3e-49 200.7 202 51.5
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.3e-48 196.1 212 49.5
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 6.8e-46 188.3 205 46.8
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.2e-45 187.6 139 66.2
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 3.7e-44 182.6 152 60.5
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 6.4e-44 181.8 227 44.9
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 9.2e-43 177.9 126 69.8
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 3.5e-42 176.0 155 56.8
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 3.9e-41 172.6 129 63.6
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.6e-39 166.0 143 58.0
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.2e-39 165.2 233 42.1
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 4.1e-35 152.5 115 66.1
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 2.1e-34 150.2 234 39.3
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 8.6e-33 144.8 120 60.8
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 3.3e-32 142.9 227 38.3
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.6e-31 140.6 185 44.3
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 2.1e-31 140.2 128 56.2
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.6e-31 139.4 126 57.9
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-30 137.9 117 59.8
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.1e-30 137.9 135 52.6
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.2e-29 134.4 120 58.3
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.8e-29 132.1 194 41.2
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 9.9e-29 131.3 139 50.4
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 3.0e-25 119.8 251 33.5
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.1e-23 113.6 76 67.1
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.1e-23 113.6 80 66.2
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 4.0e-22 109.4 105 56.2
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 5.4e-19 99.0 87 51.7
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 3.5e-18 96.3 84 51.2
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-14 84.7 85 51.8
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 2.4e-11 73.6 178 34.3
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 2.4e-11 73.6 151 33.8
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.2e-10 71.2 205 27.3
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 6.0e-10 68.9 77 50.6
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.9e-09 66.2 58 53.4
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 5.6e-08 62.4 162 30.9
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 8.1e-07 58.5 132 33.3


User provided reference genes

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