Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400020060 Solanum tuberosum HOM05D003696 ORTHO05D005158 1.6e-191 672.5 338 100.0
Solyc06g084080.4 Solanum lycopersicum HOM05D003696 ORTHO05D005158 1.7e-180 636.0 338 95.0
Sopen06g035470 Solanum pennellii HOM05D003696 ORTHO05D005158 3.8e-180 634.8 338 95.0
CAN.G771.13 Capsicum annuum HOM05D003696 ORTHO05D005158 1.1e-166 590.1 333 87.7
Nitab4.5_0004899g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 6.1e-162 574.3 338 85.8
Peaxi162Scf01311g00020 Petunia axillaris HOM05D003696 ORTHO05D005158 1.0e-161 573.5 338 84.9
Peaxi162Scf00049g02229 Petunia axillaris HOM05D003696 ORTHO05D005158 6.7e-161 570.9 337 84.0
Nitab4.5_0003053g0040 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.1e-158 563.5 337 82.2
Nitab4.5_0000187g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.2e-157 560.1 338 82.0
CAN.G1488.3 Capsicum annuum HOM05D003696 ORTHO05D005158 1.5e-157 559.7 338 81.7
Solyc09g065810.3 Solanum lycopersicum HOM05D003696 ORTHO05D005158 2.6e-157 558.9 338 82.8
Sopen09g027590 Solanum pennellii HOM05D003696 ORTHO05D005158 2.6e-157 558.9 338 82.8
Cc01_g18910 Coffea canephora HOM05D003696 ORTHO05D005158 4.2e-155 551.6 338 79.9
Lj2C1161G6 Lonicera japonica HOM05D003696 ORTHO05D005158 1.4e-153 546.6 339 79.4
Manes.01G202600 Manihot esculenta HOM05D003696 ORTHO05D005158 3.9e-153 545.0 331 79.5
Rhsim13G0030400 Rhododendron simsii HOM05D003696 ORTHO05D005158 1.1e-150 537.0 338 78.1
vmacro02623 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 1.8e-150 536.2 338 77.8
Eucgr.B01485 Eucalyptus grandis HOM05D003696 ORTHO05D005158 5.3e-150 534.6 331 78.5
Hma1.2p1_0760F.1_g214220 Hydrangea macrophylla HOM05D003696 ORTHO05D005158 7.0e-150 534.3 330 78.5
Haze_24522 Corylus avellana HOM05D003696 ORTHO05D005158 9.1e-150 533.9 331 78.9
Thecc.01G268800 Theobroma cacao HOM05D003696 ORTHO05D005158 1.2e-149 533.5 331 77.0
CSS0026583 Camellia sinensis var. sinensis HOM05D003696 ORTHO05D005158 2.6e-149 532.3 338 77.2
Migut.D00342 Erythranthe guttata HOM05D003696 ORTHO05D005158 4.5e-149 531.6 338 76.9
GSVIVG01000711001 Vitis vinifera HOM05D003696 ORTHO05D005158 7.7e-149 530.8 341 78.0
MD03G1255900 Malus domestica HOM05D003696 ORTHO05D005158 2.2e-148 529.3 331 76.1
SalBow4G1850 Salvia bowleyana HOM05D003696 ORTHO05D005158 2.2e-148 529.3 338 76.3
Dinv22488 Davidia involucrata HOM05D003696 ORTHO05D005158 2.9e-148 528.9 338 77.2
Actinidia21150 Actinidia chinensis HOM05D003696 ORTHO05D005158 3.8e-148 528.5 338 76.6
Prupe.8G233000 Prunus persica HOM05D003696 ORTHO05D005158 3.8e-148 528.5 331 77.3
Sabra02G0037000 Salix brachista HOM05D003696 ORTHO05D005158 5.0e-148 528.1 331 79.2
Potri.002G046000 Populus trichocarpa HOM05D003696 ORTHO05D005158 6.5e-148 527.7 331 77.6
QL12p042578 Quercus lobata HOM05D003696 ORTHO05D005158 1.9e-147 526.2 331 77.0
Atru.chr5.1552 Acer truncatum HOM05D003696 ORTHO05D005158 3.2e-147 525.4 331 75.8
unitig_22.g5276 Utricularia gibba HOM05D003696 ORTHO05D005158 4.2e-147 525.0 338 75.1
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.1e-146 522.7 331 77.0
Duzib133G0262 Durio zibethinus HOM05D003696 ORTHO05D005158 3.6e-146 521.9 331 75.2
CiPaw.03G256800 Carya illinoinensis HOM05D003696 ORTHO05D005158 4.7e-146 521.5 331 77.3
AUR62011954 Chenopodium quinoa HOM05D003696 ORTHO05D005158 6.1e-146 521.2 331 74.3
AUR62032267 Chenopodium quinoa HOM05D003696 ORTHO05D005158 6.1e-146 521.2 331 74.3
arahy.Tifrunner.gnm1.ann1.PHA4NK Arachis hypogaea HOM05D003696 ORTHO05D005158 8.0e-146 520.8 334 74.9
MSTRG.18280 Avicennia marina HOM05D003696 ORTHO05D005158 8.0e-146 520.8 338 75.4
Duzib138G0212 Durio zibethinus HOM05D003696 ORTHO05D005158 8.0e-146 520.8 359 71.0
FAN15G1876 Fragaria x ananassa HOM05D003696 ORTHO05D005158 8.0e-146 520.8 331 76.1
arahy.Tifrunner.gnm1.ann1.R5NTZZ Arachis hypogaea HOM05D003696 ORTHO05D005158 1.0e-145 520.4 334 75.1
FAN20G1369 Fragaria x ananassa HOM05D003696 ORTHO05D005158 1.8e-145 519.6 331 76.1
FvH4_2g22730 Fragaria vesca HOM05D003696 ORTHO05D005158 2.3e-145 519.2 331 75.8
FAN24G1113 Fragaria x ananassa HOM05D003696 ORTHO05D005158 2.3e-145 519.2 331 75.8
FAN27G2942 Fragaria x ananassa HOM05D003696 ORTHO05D005158 2.3e-145 519.2 331 75.8
Ciclev10019381m.g Citrus clementina HOM05D003696 ORTHO05D005158 4.0e-145 518.5 331 74.6
Lalb_Chr06g0162701 Lupinus albus HOM05D003696 ORTHO05D005158 4.0e-145 518.5 331 76.4
Lalb_Chr01g0019921 Lupinus albus HOM05D003696 ORTHO05D005158 5.2e-145 518.1 332 74.7
PGR119G0829 Punica granatum HOM05D003696 ORTHO05D005158 5.2e-145 518.1 331 76.1
RcHm_v2.0_Chr6g0289661 Rosa chinensis HOM05D003696 ORTHO05D005158 5.2e-145 518.1 331 75.5
Potri.005G217300 Populus trichocarpa HOM05D003696 ORTHO05D005158 6.7e-145 517.7 331 76.4
Gorai.001G242400 Gossypium raimondii HOM05D003696 ORTHO05D005158 2.0e-144 516.2 331 74.6
Nn1g02525 Nelumbo nucifera HOM05D003696 ORTHO05D005158 2.0e-144 516.2 330 76.1
CANSAT25G2047 Cannabis sativa HOM05D003696 ORTHO05D005158 5.7e-144 514.6 335 73.7
TWI75G1072 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 5.7e-144 514.6 334 74.6
Glyma.02G143000 Glycine max HOM05D003696 ORTHO05D005158 7.5e-144 514.2 332 75.6
Gohir.A07G208500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 7.5e-144 514.2 331 74.3
TAR362G0028 Trochodendron aralioides HOM05D003696 ORTHO05D005158 7.5e-144 514.2 331 77.0
CsaV3_7G027640 Cucumis sativus L. HOM05D003696 ORTHO05D005158 9.7e-144 513.8 332 75.6
MELO3C015756.2 Cucumis melo HOM05D003696 ORTHO05D005158 1.7e-143 513.1 332 75.3
MD11G1276500 Malus domestica HOM05D003696 ORTHO05D005158 1.7e-143 513.1 331 74.3
Glyma.10G031400 Glycine max HOM05D003696 ORTHO05D005158 2.2e-143 512.7 332 75.6
Gohir.D07G214400 Gossypium hirsutum HOM05D003696 ORTHO05D005158 2.8e-143 512.3 331 74.3
Lj1g0000304 Lotus japonicus HOM05D003696 ORTHO05D005158 3.7e-143 511.9 332 73.5
TWI18G1352 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 4.8e-143 511.5 331 75.2
Thhalv10016535m.g Eutrema salsugineum HOM05D003696 ORTHO05D005158 1.1e-142 510.4 337 72.4
Rhsim01G0270500 Rhododendron simsii HOM05D003696 ORTHO05D005158 1.1e-142 510.4 338 74.0
Gohir.A11G126500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.8e-142 509.6 331 73.1
Gohir.D11G132000 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.8e-142 509.6 331 72.8
Phvul.007G176200 Phaseolus vulgaris HOM05D003696 ORTHO05D005158 1.8e-142 509.6 332 73.2
CARHR133570 Cardamine hirsuta HOM05D003696 ORTHO05D005158 4.1e-142 508.4 337 72.4
ECA248G0710 Erigeron canadensis HOM05D003696 ORTHO05D005158 7.0e-142 507.7 339 74.0
Gorai.007G141200 Gossypium raimondii HOM05D003696 ORTHO05D005158 7.0e-142 507.7 331 72.5
PSO210G6865 Papaver somniferum HOM05D003696 ORTHO05D005158 1.2e-141 506.9 334 74.0
PSO832G3077 Papaver somniferum HOM05D003696 ORTHO05D005158 1.2e-141 506.9 334 74.0
Sp4g21230 Schrenkiella parvula HOM05D003696 ORTHO05D005158 1.2e-141 506.9 337 71.8
Sed0021830 Sechium edule HOM05D003696 ORTHO05D005158 3.5e-141 505.4 332 74.1
Aa31LG5G20830 Aethionema arabicum HOM05D003696 ORTHO05D005158 5.9e-141 504.6 337 71.5
Manes.05G083700 Manihot esculenta HOM05D003696 ORTHO05D005158 1.0e-140 503.8 331 74.3
AT2G38840 Arabidopsis thaliana HOM05D003696 ORTHO05D005158 1.7e-140 503.1 337 71.5
Aqoxy5G00373 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 2.9e-140 502.3 335 72.2
Carub.0004s2087 Capsella rubella HOM05D003696 ORTHO05D005158 5.0e-140 501.5 337 71.2
Lj5g0013019 Lotus japonicus HOM05D003696 ORTHO05D005158 6.5e-140 501.1 332 72.9
Aqoxy2G03500 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 8.5e-140 500.7 341 73.0
A03p21680 Brassica napus HOM05D003696 ORTHO05D005158 8.5e-140 500.7 337 70.9
BraA03t11403Z Brassica rapa HOM05D003696 ORTHO05D005158 8.5e-140 500.7 337 70.9
A04p29630 Brassica napus HOM05D003696 ORTHO05D005158 1.1e-139 500.4 339 71.4
AL4G36150 Arabidopsis lyrata HOM05D003696 ORTHO05D005158 1.9e-139 499.6 337 70.9
C03p25680 Brassica napus HOM05D003696 ORTHO05D005158 1.9e-139 499.6 337 70.9
Ca_08640_v3 Cicer arietinum L. HOM05D003696 ORTHO05D005158 1.9e-139 499.6 332 71.7
BcaC01g05515 Brassica carinata HOM05D003696 ORTHO05D005158 2.5e-139 499.2 337 70.6
BolC3t14954H Brassica oleracea HOM05D003696 ORTHO05D005158 2.5e-139 499.2 337 70.6
BcaC02g07441 Brassica carinata HOM05D003696 ORTHO05D005158 3.2e-139 498.8 339 71.1
C04p66920 Brassica napus HOM05D003696 ORTHO05D005158 3.2e-139 498.8 339 71.1
THA.LOC104824177 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 3.2e-139 498.8 341 71.0
BraA04t18429Z Brassica rapa HOM05D003696 ORTHO05D005158 9.4e-139 497.3 339 71.1
BcaB01g03621 Brassica carinata HOM05D003696 ORTHO05D005158 1.6e-138 496.5 337 70.3
TPR.G19113 Trifolium pratense HOM05D003696 ORTHO05D005158 1.6e-138 496.5 332 71.4
vmacro14880 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 1.6e-138 496.5 384 65.6
Psat3g060760 Pisum sativum HOM05D003696 ORTHO05D005158 2.1e-138 496.1 332 70.8
Lsat_1_v5_gn_5_186821 Lactuca sativa HOM05D003696 ORTHO05D005158 8.0e-138 494.2 341 71.3
THA.LOC104804694 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 1.0e-137 493.8 341 70.4
BolC4t28193H Brassica oleracea HOM05D003696 ORTHO05D005158 1.4e-137 493.4 339 70.8
HanXRQChr01g0006891 Helianthus annuus HOM05D003696 ORTHO05D005158 1.8e-137 493.0 339 71.7
ATR0665G388 Amborella trichopoda HOM05D003696 ORTHO05D005158 5.2e-137 491.5 342 70.5
EL10Ac5g10463 Beta vulgaris HOM05D003696 ORTHO05D005158 2.0e-136 489.6 337 69.7
HanXRQChr06g0177911 Helianthus annuus HOM05D003696 ORTHO05D005158 7.5e-136 487.6 343 70.6
Medtr1g070940 Medicago truncatula HOM05D003696 ORTHO05D005158 2.8e-135 485.7 336 72.3
TAR365G0099 Trochodendron aralioides HOM05D003696 ORTHO05D005158 1.1e-131 473.8 294 79.6
Oeu011521.4 Olea europaea HOM05D003696 ORTHO05D005158 3.2e-131 472.2 294 78.6
CDE07G1976 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 5.5e-131 471.5 340 67.9
HPP92_012304 Vanilla planifolia HOM05D003696 ORTHO05D005158 1.6e-130 469.9 331 66.8
CDE04G3179 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 3.6e-130 468.8 340 67.4
arahy.Tifrunner.gnm1.ann1.RW1UC5 Arachis hypogaea HOM05D003696 ORTHO05D005158 1.4e-129 466.8 330 67.0
arahy.Tifrunner.gnm1.ann1.YF2GLB Arachis hypogaea HOM05D003696 ORTHO05D005158 8.8e-129 464.2 330 66.7
TPR.G39048 Trifolium pratense HOM05D003696 ORTHO05D005158 5.7e-128 461.5 322 70.5
ClCG09G007480 Citrullus lanatus HOM05D003696 ORTHO05D005158 7.5e-128 461.1 294 77.6
Os03g0796800 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 1.1e-126 457.2 336 66.4
VMungo0720G2873 Vigna mungo HOM05D003696 ORTHO05D005158 4.1e-126 455.3 294 76.2
Zm00001eb060800 Zea mays HOM05D003696 ORTHO05D005158 1.0e-124 450.7 336 65.5
SHI09972 Sapria himalayana HOM05D003696 ORTHO05D005158 3.8e-124 448.7 301 73.1
DCAR_002690 Daucus carota HOM05D003696 ORTHO05D005158 1.0e-121 440.7 295 74.6
Medtr7g096020 Medicago truncatula HOM05D003696 ORTHO05D005158 1.0e-121 440.7 294 73.5
Nitab4.5_0001044g0030 Nicotiana tabacum HOM05D003696 ORTHO05D005158 2.3e-121 439.5 338 70.1
Zm00001eb301480 Zea mays HOM05D003696 ORTHO05D005158 1.2e-120 437.2 328 62.2
Os07g0181700 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 2.0e-120 436.4 327 62.1
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 3.5e-117 425.6 315 67.6
SEGI_18155 Sequoiadendron giganteum HOM05D003696 ORTHO05D005158 3.6e-114 415.6 331 61.0
Oeu025782.1 Olea europaea HOM05D003696 ORTHO05D005158 3.1e-113 412.5 338 63.3
Psat6g058040 Pisum sativum HOM05D003696 ORTHO05D005158 9.5e-107 391.0 262 74.0
COL.COLO4_06092 Corchorus olitorius HOM05D003696 ORTHO05D005158 2.1e-101 373.2 294 65.6
SMO358G0641 Selaginella moellendorffii HOM05D003696 ORTHO05D005158 1.6e-98 363.6 311 55.0
Mapoly0093s0035 Marchantia polymorpha HOM05D003696 ORTHO05D005158 7.8e-93 344.7 334 50.6
Pp3c22_17680 Physcomitrium patens HOM05D003696 ORTHO05D005158 1.6e-90 337.0 338 52.7
Hund22719 Selenicereus undatus HOM05D003696 ORTHO05D005158 2.6e-88 329.7 200 75.0
Dinv34560 Davidia involucrata HOM05D003696 ORTHO05D005158 7.6e-88 328.2 212 78.3
Actinidia24931 Actinidia chinensis HOM05D003696 ORTHO05D005158 3.3e-83 312.8 207 73.9
Cpa.g.sc52.106 Carica papaya HOM05D003696 ORTHO05D005158 3.3e-83 312.8 204 75.5
Sc05g0001070 Simmondsia chinensis HOM05D003696 ORTHO05D005158 2.6e-80 303.1 204 73.0
Sed0026747 Sechium edule HOM05D003696 ORTHO05D005158 1.3e-79 300.8 212 70.8
CBR_g8307 Chara braunii HOM05D003696 ORTHO05D005158 3.3e-75 286.2 299 45.5
DCAR_018442 Daucus carota HOM05D003696 ORTHO05D005158 1.1e-73 281.2 234 62.0
Zm00001eb060850 Zea mays HOM05D003696 ORTHO05D005158 2.4e-73 280.0 294 52.0
Ah.11g050060 Amaranthus hybridus HOM05D003696 ORTHO05D005158 1.4e-70 270.8 187 71.1
Zm00001eb060900 Zea mays HOM05D003696 ORTHO05D020192 3.7e-66 256.1 177 68.4
HanXRQChr04g0094761 Helianthus annuus HOM05D003696 ORTHO05D005158 3.9e-60 236.1 160 71.2
Ah.02g111370 Amaranthus hybridus HOM05D003696 ORTHO05D005158 7.4e-59 231.9 164 68.9
arahy.Tifrunner.gnm1.ann1.1H3032 Arachis hypogaea HOM05D003696 ORTHO05D005158 1.3e-52 211.1 205 57.6
arahy.Tifrunner.gnm1.ann1.VHR0A7 Arachis hypogaea HOM05D001154 ORTHO05D010892 1.3e-50 204.5 124 79.0
Hund22720 Selenicereus undatus HOM05D003696 ORTHO05D005158 1.5e-48 197.6 132 73.5
Duzib211G0248 Durio zibethinus HOM05D003696 ORTHO05D020192 1.2e-45 188.0 117 79.5
FAN12G4236 Fragaria x ananassa HOM05D003696 ORTHO05D005158 2.2e-42 177.2 205 45.9
Cre16.g663050 Chlamydomonas reinhardtii HOM05D003696 ORTHO05D005158 2.4e-41 173.7 285 33.7
MCO03G033 Micromonas commoda HOM05D003696 ORTHO05D005158 3.4e-40 169.9 320 31.2
Zm00001eb212950 Zea mays HOM05D003696 ORTHO05D005158 1.2e-37 161.4 132 61.4
Cpa.g.sc52.105 Carica papaya HOM05D003696 ORTHO05D020192 5.2e-36 156.0 96 76.0
arahy.Tifrunner.gnm1.ann1.Y88CQU Arachis hypogaea HOM05D003696 ORTHO05D005158 5.7e-35 152.5 140 59.3
HanXRQChr11g0343431 Helianthus annuus HOM05D003696 ORTHO05D005158 1.2e-27 128.3 103 59.2
C04p68080 Brassica napus HOM05D003696 ORTHO05D020192 8.3e-18 95.5 59 64.4
BolC4t28313H Brassica oleracea HOM05D003696 ORTHO05D020192 8.3e-18 95.5 59 64.4
C04p68090 Brassica napus HOM05D025610 ORTHO05D016804 1.2e-16 91.7 109 46.8
BolC4t28314H Brassica oleracea HOM05D025610 ORTHO05D016804 1.2e-16 91.7 109 46.8
C04p68070 Brassica napus HOM05D003696 ORTHO05D016804 2.7e-16 90.5 66 66.7
BolC4t28312H Brassica oleracea HOM05D003696 ORTHO05D016804 2.7e-16 90.5 66 66.7
BraA04t18522Z Brassica rapa HOM05D003696 ORTHO05D020192 2.7e-16 90.5 59 61.0
BraA04t18521Z Brassica rapa HOM05D000956 ORTHO05D016804 2.1e-13 80.9 57 64.9
BcaC02g07333 Brassica carinata HOM05D001127 ORTHO05D016804 2.0e-11 74.3 45 73.3
HanXRQChr03g0064341 Helianthus annuus HOM05D003696 ORTHO05D020192 3.7e-10 70.1 33 87.9
A06p28820 Brassica napus HOM05D003696 ORTHO05D016804 7.0e-09 65.9 44 65.9
BraA06t25826Z Brassica rapa HOM05D003696 ORTHO05D016804 7.0e-09 65.9 44 65.9
arahy.Tifrunner.gnm1.ann1.IE214W Arachis hypogaea HOM05D001154 ORTHO05D010892 2.0e-08 64.3 34 73.5
BcaC02g07336 Brassica carinata HOM05D001127 ORTHO05D002230 2.7e-08 63.9 34 70.6
HanXRQChr09g0243441 Helianthus annuus HOM05D003696 ORTHO05D005158 5.6e-06 56.2 33 78.8


User provided reference genes

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