Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 5.4e-159 564.3 292 100.0
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 3.1e-146 521.9 292 91.8
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 1.2e-145 520.0 292 91.8
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 4.8e-131 471.5 291 81.8
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 2.2e-128 462.6 287 82.9
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.4e-127 459.9 291 81.4
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 1.3e-125 453.4 292 78.1
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 2.1e-78 296.6 291 55.7
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 4.9e-75 285.4 289 54.0
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 8.3e-75 284.6 292 50.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.2e-73 280.8 290 50.3
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 2.0e-73 280.0 287 52.3
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.3e-72 277.3 298 52.3
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.3e-72 277.3 307 50.5
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 1.7e-72 276.9 298 49.0
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 3.9e-72 275.8 292 51.4
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 5.0e-72 275.4 288 53.8
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 1.1e-71 274.2 291 52.9
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.1e-71 274.2 295 49.8
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.9e-71 273.5 288 52.4
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.9e-71 273.5 287 49.5
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 2.5e-71 273.1 285 49.8
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 9.5e-71 271.2 303 49.8
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.1e-70 270.0 291 53.6
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 3.6e-70 269.2 294 48.6
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.6e-70 269.2 299 50.8
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.0e-69 267.7 296 49.0
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 2.3e-69 266.5 290 49.7
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.5e-68 263.8 295 48.8
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 2.0e-68 263.5 302 48.3
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 2.6e-68 263.1 290 51.0
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 4.4e-68 262.3 291 49.5
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 4.4e-68 262.3 287 49.5
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 5.8e-68 261.9 291 49.5
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 4.9e-67 258.8 300 46.7
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 6.4e-67 258.5 287 53.3
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.4e-67 258.5 287 53.3
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 8.3e-67 258.1 286 50.0
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.9e-66 256.9 287 53.0
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.4e-66 256.5 286 48.6
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.2e-66 256.1 287 53.0
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-65 254.2 287 52.3
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 7.8e-65 251.5 294 46.9
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 7.8e-65 251.5 291 49.1
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.0e-64 251.1 294 46.3
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 5.0e-64 248.8 288 48.3
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 6.6e-64 248.4 294 45.2
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 8.6e-64 248.1 327 45.0
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 1.1e-63 247.7 290 48.3
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.5e-63 247.3 301 45.2
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.9e-63 246.9 288 47.2
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.5e-63 246.5 291 46.7
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 4.3e-63 245.7 293 46.1
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.3e-63 245.0 319 48.0
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 9.5e-63 244.6 293 46.8
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 9.5e-63 244.6 263 49.8
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.2e-62 244.2 251 51.0
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 1.4e-61 240.7 179 72.1
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.8e-61 240.4 262 50.8
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.8e-61 240.4 292 45.9
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.0e-61 239.2 288 46.5
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 6.8e-61 238.4 286 47.2
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.7e-59 233.8 289 44.3
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 3.2e-58 229.6 298 41.6
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.6e-57 227.3 292 43.8
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.6e-57 227.3 296 44.6
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 2.1e-57 226.9 270 45.2
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 4.6e-57 225.7 291 43.6
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 2.3e-56 223.4 288 43.8
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 2.5e-55 219.9 303 43.6
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.2e-52 211.1 205 54.6
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 5.8e-52 208.8 287 42.9
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.3e-51 207.6 267 43.1
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 4.9e-51 205.7 267 43.4
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 7.1e-50 201.8 286 40.9
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.7e-49 199.9 330 37.3
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 2.5e-47 193.4 161 60.9
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 4.3e-47 192.6 207 49.3
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 6.9e-45 185.3 266 42.1
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 8.9e-45 184.9 284 39.4
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.2e-44 184.5 284 39.4
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.0e-44 183.7 266 41.4
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 4.4e-44 182.6 283 38.2
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.4e-44 182.6 297 39.1
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.4e-42 177.6 196 52.0
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.9e-42 177.2 234 47.4
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 2.4e-42 176.8 150 61.3
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 7.1e-42 175.3 209 48.8
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 5.1e-40 169.1 194 45.4
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 1.5e-39 167.5 287 38.0
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 1.5e-39 167.5 201 45.3
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.6e-38 164.1 284 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.6e-38 162.9 303 32.0
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.1e-37 161.4 215 44.2
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.5e-36 157.5 242 39.7
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 8.7e-32 141.7 199 42.7
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 7.4e-31 138.7 214 42.5
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.1e-30 137.1 289 34.6
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 4.8e-30 136.0 137 50.4
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.0e-28 130.6 237 36.3
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 3.4e-28 129.8 200 37.5
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 4.5e-28 129.4 226 37.2
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 4.5e-28 129.4 303 33.3
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 9.9e-28 128.3 342 30.1
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.7e-27 127.5 264 31.4
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 2.2e-27 127.1 227 37.0
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.9e-26 124.0 226 35.0
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 9.3e-26 121.7 249 32.5
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.2e-25 121.3 93 66.7
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 7.9e-25 118.6 105 59.0
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.3e-22 111.3 201 36.3
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.4e-21 107.8 123 49.6
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 6.9e-21 105.5 102 54.9
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.5e-20 104.4 105 51.4
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 4.5e-20 102.8 275 30.2
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 1.6e-17 94.4 79 65.8
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 6.0e-17 92.4 58 77.6
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.8e-16 90.9 58 75.9
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.3e-16 90.5 106 44.3
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 6.7e-16 89.0 81 58.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 6.7e-16 89.0 81 58.0
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.9e-15 87.4 141 40.4
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.3e-15 86.7 57 71.9
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.1e-13 79.7 57 64.9
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.3e-11 74.7 185 31.9
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 1.8e-08 64.3 123 29.3
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 6.7e-08 62.4 51 54.9
AagrBONN_evm.TU.Sc2ySwM_117.310 Anthoceros agrestis HOM05D020303 ORTHO05D021299 3.7e-06 56.6 46 56.5
ClCG04G003940 Citrullus lanatus HOM05D007529 ORTHO05D007451 6.3e-06 55.8 67 44.8
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 6.3e-06 55.8 153 30.1


User provided reference genes

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