Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019879 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.6e-49 198.4 96 100.0
Sopen02g011120 Solanum pennellii HOM05D003074 ORTHO05D002434 4.5e-46 187.6 96 94.8
Nitab4.5_0009398g0020 Nicotiana tabacum HOM05D003074 ORTHO05D002434 7.8e-22 107.1 107 58.9
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 3.6e-11 71.6 122 35.2
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 5.2e-10 67.8 110 39.1
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 6.8e-10 67.4 103 37.9
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 8.9e-10 67.0 66 56.1
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 8.9e-10 67.0 112 35.7
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.2e-09 66.6 116 35.3
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 2.0e-09 65.9 100 34.0
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.0e-09 65.9 103 37.9
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 2.0e-09 65.9 127 36.2
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 3.4e-09 65.1 118 36.4
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 4.4e-09 64.7 112 36.6
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 5.8e-09 64.3 113 36.3
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 5.8e-09 64.3 103 37.9
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 5.8e-09 64.3 119 36.1
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 7.6e-09 63.9 106 35.8
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 9.9e-09 63.5 89 40.4
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 9.9e-09 63.5 115 33.9
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 1.3e-08 63.2 91 42.9
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 1.3e-08 63.2 101 38.6
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.3e-08 63.2 128 34.4
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 1.7e-08 62.8 78 39.7
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.7e-08 62.8 76 43.4
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.2e-08 62.4 57 49.1
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.2e-08 62.4 79 43.0
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 2.9e-08 62.0 73 39.7
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 2.9e-08 62.0 101 34.7
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 2.9e-08 62.0 60 48.3
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 3.8e-08 61.6 83 42.2
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 3.8e-08 61.6 57 54.4
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.9e-08 61.2 112 34.8
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.9e-08 61.2 67 43.3
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.9e-08 61.2 67 41.8
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 4.9e-08 61.2 67 41.8
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 4.9e-08 61.2 81 40.7
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 4.9e-08 61.2 103 35.9
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 6.4e-08 60.8 67 43.3
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 6.4e-08 60.8 57 52.6
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 8.4e-08 60.5 121 32.2
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 8.4e-08 60.5 117 30.8
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 8.4e-08 60.5 102 38.2
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.1e-07 60.1 67 52.2
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 1.1e-07 60.1 56 51.8
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 1.1e-07 60.1 67 46.3
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 1.4e-07 59.7 114 37.7
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.4e-07 59.7 102 36.3
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.4e-07 59.7 102 36.3
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 1.4e-07 59.7 128 34.4
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 1.9e-07 59.3 108 34.3
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 1.9e-07 59.3 103 35.9
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 1.9e-07 59.3 101 38.6
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.9e-07 59.3 56 44.6
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 2.4e-07 58.9 60 46.7
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.4e-07 58.9 60 46.7
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.4e-07 58.9 67 50.7
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 2.4e-07 58.9 122 32.8
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 2.4e-07 58.9 110 35.5
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.2e-07 58.5 60 46.7
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.2e-07 58.5 60 46.7
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.2e-07 58.5 57 45.6
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.2e-07 58.5 67 44.8
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 3.2e-07 58.5 115 33.0
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 3.2e-07 58.5 99 37.4
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 3.2e-07 58.5 101 32.7
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 3.2e-07 58.5 112 32.1
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.2e-07 58.2 69 40.6
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.2e-07 58.2 61 45.9
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 4.2e-07 58.2 95 34.7
Nitab4.5_0009995g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 4.2e-07 58.2 97 35.1
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 5.4e-07 57.8 92 39.1
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 5.4e-07 57.8 67 41.8
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 5.4e-07 57.8 97 33.0
Gohir.A05G169900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.4e-07 57.8 118 29.7
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 5.4e-07 57.8 112 33.0
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 5.4e-07 57.8 67 41.8
Aa31LG6G3910 Aethionema arabicum HOM05D003074 ORTHO05D002434 7.1e-07 57.4 83 39.8
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 7.1e-07 57.4 81 37.0
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 7.1e-07 57.4 63 46.0
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 7.1e-07 57.4 57 43.9
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 7.1e-07 57.4 57 43.9
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 7.1e-07 57.4 57 43.9
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 7.1e-07 57.4 57 45.6
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 7.1e-07 57.4 60 45.0
Eucgr.E04062 Eucalyptus grandis HOM05D003074 ORTHO05D002434 9.3e-07 57.0 118 35.6
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 9.3e-07 57.0 114 34.2
MD05G1345200 Malus domestica HOM05D003074 ORTHO05D002434 9.3e-07 57.0 79 48.1
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.2e-06 56.6 132 31.1
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.2e-06 56.6 111 35.1
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 1.2e-06 56.6 83 34.9
Gohir.D05G173050 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.2e-06 56.6 117 31.6
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 1.2e-06 56.6 57 43.9
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 1.2e-06 56.6 57 43.9
Phvul.008G267000 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 1.2e-06 56.6 102 34.3
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 1.6e-06 56.2 68 44.1
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.6e-06 56.2 66 42.4
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 1.6e-06 56.2 56 44.6
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 1.6e-06 56.2 105 34.3
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 1.6e-06 56.2 112 35.7
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 1.6e-06 56.2 72 40.3
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.1e-06 55.8 116 31.9
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 2.1e-06 55.8 118 29.7
Ca_00651_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 2.1e-06 55.8 87 41.4
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 2.1e-06 55.8 80 42.5
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 2.1e-06 55.8 66 39.4
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 2.1e-06 55.8 56 55.4
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 2.1e-06 55.8 67 41.8
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.1e-06 55.8 57 43.9
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.1e-06 55.8 76 42.1
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 2.7e-06 55.5 67 43.3
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 2.7e-06 55.5 68 50.0
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.7e-06 55.5 78 35.9
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 2.7e-06 55.5 123 31.7
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 2.7e-06 55.5 60 43.3
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.7e-06 55.5 57 45.6
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.5e-06 55.1 119 34.5
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 3.5e-06 55.1 56 50.0
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 3.5e-06 55.1 70 41.4
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 3.5e-06 55.1 126 34.9
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 4.6e-06 54.7 116 31.9
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 4.6e-06 54.7 68 42.6
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 4.6e-06 54.7 96 35.4
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 6.0e-06 54.3 110 34.5
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 6.0e-06 54.3 56 48.2
Sopen03g005540 Solanum pennellii HOM05D037882 ORTHO05D002434 6.0e-06 54.3 124 36.3
VMungo0540G1774 Vigna mungo HOM05D008677 ORTHO05D002434 6.0e-06 54.3 93 45.2
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 7.8e-06 53.9 62 41.9
AUR62021958 Chenopodium quinoa HOM05D003074 ORTHO05D002434 7.8e-06 53.9 102 35.3
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 7.8e-06 53.9 73 41.1
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 7.8e-06 53.9 78 38.5


User provided reference genes

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