Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.5e-98 362.8 181 100.0
PGSC0003DMG400006020 Solanum tuberosum HOM05D000552 ORTHO05D000469 5.2e-19 98.6 63 81.0
CAN.G948.1 Capsicum annuum HOM05D000552 ORTHO05D000469 4.9e-17 92.0 59 81.4
Nitab4.5_0000111g0090 Nicotiana tabacum HOM05D000552 ORTHO05D000469 2.4e-16 89.7 159 39.6
Peaxi162Scf00310g00419 Petunia axillaris HOM05D000552 ORTHO05D000469 3.5e-15 85.9 161 38.5
Nitab4.5_0006720g0060 Nicotiana tabacum HOM05D000552 ORTHO05D000469 5.1e-14 82.0 158 36.7
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.5e-13 80.5 40 92.5
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.5e-13 80.5 40 92.5
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 5.6e-13 78.6 40 90.0
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 9.6e-13 77.8 40 90.0
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 9.6e-13 77.8 40 90.0
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 2.1e-12 76.6 40 85.0
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 4.7e-12 75.5 45 73.3
PGSC0003DMG400040755 Solanum tuberosum HOM05D026559 ORTHO05D023355 4.7e-12 75.5 61 72.1
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.8e-11 73.6 61 59.0
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.8e-11 73.6 45 71.1
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.8e-11 73.6 45 71.1
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 2.4e-11 73.2 40 80.0
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 3.1e-11 72.8 40 82.5
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 3.1e-11 72.8 40 82.5
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 4.0e-11 72.4 50 68.0
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 4.0e-11 72.4 40 82.5
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 5.2e-11 72.0 40 77.5
Solyc11g005090.2 Solanum lycopersicum HOM05D000552 ORTHO05D000469 5.2e-11 72.0 41 90.2
Sopen11g001090 Solanum pennellii HOM05D000552 ORTHO05D000469 5.2e-11 72.0 41 90.2
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 6.8e-11 71.6 40 80.0
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 6.8e-11 71.6 40 80.0
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 6.8e-11 71.6 40 77.5
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 8.9e-11 71.2 40 80.0
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 8.9e-11 71.2 40 77.5
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 8.9e-11 71.2 40 77.5
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 8.9e-11 71.2 40 77.5
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.2e-10 70.9 40 80.0
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.2e-10 70.9 40 80.0
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 2.0e-10 70.1 40 77.5
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 2.0e-10 70.1 50 66.0
Solyc01g044558.1 Solanum lycopersicum HOM05D026559 ORTHO05D026362 2.0e-10 70.1 47 80.9
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 2.6e-10 69.7 40 75.0
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.6e-10 69.7 40 75.0
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.4e-10 69.3 40 77.5
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 3.4e-10 69.3 104 39.4
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.4e-10 68.9 168 30.4
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 4.4e-10 68.9 154 35.7
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 7.6e-10 68.2 45 66.7
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 7.6e-10 68.2 43 69.8
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 7.6e-10 68.2 50 64.0
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 9.9e-10 67.8 40 72.5
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 9.9e-10 67.8 40 75.0
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-09 67.4 40 75.0
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.3e-09 67.4 40 75.0
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 1.3e-09 67.4 50 64.0
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.7e-09 67.0 41 75.6
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.7e-09 67.0 40 75.0
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 1.7e-09 67.0 40 77.5
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 2.2e-09 66.6 40 72.5
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 2.2e-09 66.6 40 72.5
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 2.2e-09 66.6 40 75.0
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 2.9e-09 66.2 40 70.0
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 2.9e-09 66.2 40 70.0
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 2.9e-09 66.2 40 72.5
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 2.9e-09 66.2 40 70.0
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 3.8e-09 65.9 50 62.0
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.8e-09 65.9 40 72.5
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.8e-09 65.9 104 37.5
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 3.8e-09 65.9 45 64.4
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 3.8e-09 65.9 40 75.0
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 4.9e-09 65.5 156 32.1
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 4.9e-09 65.5 40 77.5
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 4.9e-09 65.5 40 80.0
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 4.9e-09 65.5 40 77.5
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 6.4e-09 65.1 40 70.0
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 8.4e-09 64.7 38 73.7
Atru.chr13.1540 Acer truncatum HOM05D000552 ORTHO05D000469 1.1e-08 64.3 61 55.7
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-08 64.3 40 67.5
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-08 64.3 40 67.5
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.1e-08 64.3 40 70.0
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.1e-08 64.3 43 65.1
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.1e-08 64.3 39 69.2
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.4e-08 63.9 104 36.5
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.4e-08 63.9 104 36.5
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.4e-08 63.9 41 70.7
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.9e-08 63.5 50 58.0
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 1.9e-08 63.5 43 67.4
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.4e-08 63.2 39 69.2
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.4e-08 63.2 41 70.7
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 4.2e-08 62.4 43 65.1
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 4.2e-08 62.4 42 71.4
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 5.4e-08 62.0 41 73.2
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.4e-08 62.0 40 67.5
Oeu041725.1 Olea europaea HOM05D000552 ORTHO05D000469 5.4e-08 62.0 75 46.7
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.1e-08 61.6 40 65.0
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 7.1e-08 61.6 41 73.2
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 9.3e-08 61.2 40 65.0
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 9.3e-08 61.2 40 67.5
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 9.3e-08 61.2 41 75.6
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.2e-07 60.8 38 65.8
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.2e-07 60.8 41 73.2
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.2e-07 60.8 41 73.2
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.2e-07 60.8 41 73.2
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.2e-07 60.8 99 41.4
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.2e-07 60.8 41 73.2
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.6e-07 60.5 40 70.0
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.1e-07 60.1 38 65.8
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.1e-07 60.1 40 62.5
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 2.1e-07 60.1 41 73.2
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 2.1e-07 60.1 41 68.3
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 2.1e-07 60.1 40 67.5
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 3.5e-07 59.3 40 62.5
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 4.6e-07 58.9 46 60.9
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 4.6e-07 58.9 40 60.0
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 7.8e-07 58.2 40 62.5
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 7.8e-07 58.2 41 68.3
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 7.8e-07 58.2 40 62.5
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 7.8e-07 58.2 104 37.5
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 7.8e-07 58.2 40 70.0
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.0e-06 57.8 41 70.7
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.0e-06 57.8 41 68.3
QL09p033127 Quercus lobata HOM05D000552 ORTHO05D000469 1.0e-06 57.8 74 47.3
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.3e-06 57.4 40 60.0
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 1.3e-06 57.4 40 60.0
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-06 57.4 38 63.2
Haze_18008 Corylus avellana HOM05D000031 ORTHO05D000030 1.3e-06 57.4 61 50.8
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 1.3e-06 57.4 40 60.0
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.3e-06 57.4 40 62.5
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.7e-06 57.0 40 57.5
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 1.7e-06 57.0 40 67.5
Potri.005G181400 Populus trichocarpa HOM05D000552 ORTHO05D000469 1.7e-06 57.0 60 48.3
Sabra02G0062600 Salix brachista HOM05D000552 ORTHO05D000469 1.7e-06 57.0 90 38.9
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.7e-06 57.0 40 62.5
Actinidia03420 Actinidia chinensis HOM05D000552 ORTHO05D000469 2.3e-06 56.6 62 53.2
MSTRG.1419 Avicennia marina HOM05D000552 ORTHO05D000469 2.3e-06 56.6 62 45.2
Sabra05G0137400 Salix brachista HOM05D000552 ORTHO05D000469 2.3e-06 56.6 59 49.2
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 3.9e-06 55.8 40 57.5
Dinv14656 Davidia involucrata HOM05D000552 ORTHO05D000469 3.9e-06 55.8 61 54.1
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 3.9e-06 55.8 42 64.3
Manes.18G081100 Manihot esculenta HOM05D000552 ORTHO05D000469 3.9e-06 55.8 154 31.2
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 5.1e-06 55.5 40 57.5
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 5.1e-06 55.5 40 57.5
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.1e-06 55.5 41 65.9
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.1e-06 55.5 41 65.9
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 5.1e-06 55.5 40 57.5
TWI32G1340 Tripterygium wilfordii HOM05D000552 ORTHO05D000469 5.1e-06 55.5 54 51.9
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 6.6e-06 55.1 40 60.0
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 6.6e-06 55.1 40 60.0
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 8.7e-06 54.7 40 57.5


User provided reference genes

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