Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 8.9e-293 1009.6 535 100.0
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 2.4e-290 1001.5 535 99.3
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 7.1e-290 1000.0 535 99.1
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 2.8e-262 908.3 635 78.1
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 2.2e-254 882.1 501 91.2
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 3.3e-247 858.2 626 77.2
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 5.2e-240 834.3 504 83.1
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 9.7e-239 830.1 504 82.7
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 3.5e-236 821.6 533 78.6
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 2.5e-234 815.5 534 78.3
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 4.2e-234 814.7 501 80.8
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 4.0e-232 808.1 504 80.2
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 6.7e-232 807.4 530 77.9
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 2.0e-231 805.8 532 77.3
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 4.4e-231 804.7 508 80.5
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 5.7e-231 804.3 501 81.4
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 9.7e-231 803.5 534 78.1
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 2.2e-230 802.4 501 80.6
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 2.8e-230 802.0 542 77.1
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 2.8e-230 802.0 501 81.0
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 3.7e-230 801.6 505 81.0
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 3.7e-230 801.6 501 81.6
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 3.7e-230 801.6 534 77.9
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.8e-229 799.3 528 77.1
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 5.3e-229 797.7 504 79.4
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 1.6e-228 796.2 499 79.6
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 2.7e-228 795.4 504 78.8
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 4.5e-228 794.7 501 79.4
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 5.9e-228 794.3 535 75.3
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 7.7e-228 793.9 504 79.2
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 7.7e-228 793.9 504 78.6
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 1.7e-227 792.7 501 79.6
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 6.5e-227 790.8 538 75.8
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.1e-226 790.0 504 78.4
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 2.5e-226 788.9 501 78.8
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 5.5e-226 787.7 502 79.9
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 5.5e-226 787.7 529 76.4
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 9.4e-226 786.9 501 78.8
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.2e-225 786.6 550 74.0
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 2.1e-225 785.8 501 77.8
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 2.1e-225 785.8 501 78.8
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 3.6e-225 785.0 501 78.8
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 6.1e-225 784.3 501 78.6
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.0e-224 783.5 539 76.1
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 1.0e-224 783.5 495 79.4
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 1.0e-224 783.5 501 78.6
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 6.8e-224 780.8 554 73.5
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 8.8e-224 780.4 506 78.3
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 8.8e-224 780.4 502 79.1
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.3e-222 776.5 544 75.7
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 1.3e-222 776.5 531 76.1
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.6e-220 769.6 626 66.0
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 2.0e-220 769.2 531 73.1
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 2.7e-220 768.8 527 75.3
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 3.5e-220 768.5 503 77.7
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 3.5e-220 768.5 500 78.2
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 1.7e-219 766.1 501 76.8
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 6.5e-219 764.2 504 76.6
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 8.5e-219 763.8 502 76.5
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 1.5e-218 763.1 531 73.3
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 4.2e-218 761.5 501 76.4
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 9.5e-218 760.4 503 76.5
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.7e-217 758.1 517 74.9
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 1.0e-216 756.9 501 76.2
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 8.8e-216 753.8 542 71.6
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 1.3e-214 750.0 501 76.0
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 2.8e-214 748.8 511 74.8
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 1.1e-213 746.9 554 70.4
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 1.1e-213 746.9 517 73.9
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 2.4e-213 745.7 528 73.5
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 4.5e-212 741.5 504 75.0
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 5.9e-212 741.1 503 75.3
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.3e-211 740.0 503 75.0
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.8e-211 738.4 503 75.1
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 1.9e-210 736.1 525 71.0
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 5.6e-210 734.6 500 75.8
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 2.3e-208 729.2 500 75.0
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 1.2e-207 726.9 500 74.4
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 2.0e-207 726.1 540 72.6
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 4.4e-207 724.9 531 71.2
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 5.7e-207 724.5 530 70.8
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 2.4e-205 719.2 503 73.8
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 1.7e-203 713.0 559 68.5
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 6.6e-203 711.1 447 79.9
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 4.3e-202 708.4 498 73.7
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 4.4e-199 698.4 541 67.5
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 6.4e-190 667.9 426 79.8
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 2.7e-188 662.5 503 66.2
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 4.6e-188 661.8 502 69.9
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 7.8e-188 661.0 503 69.0
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 6.6e-187 657.9 493 66.5
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 5.6e-186 654.8 504 66.1
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 2.1e-177 626.3 430 75.6
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 3.6e-177 625.5 365 91.2
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 9.0e-176 620.9 501 62.5
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 9.0e-176 620.9 501 62.5
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 4.5e-167 592.0 446 66.1
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 1.8e-163 580.1 392 76.3
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 1.8e-163 580.1 467 66.0
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 1.3e-161 573.9 485 60.6
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.1e-161 573.2 399 73.7
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 1.9e-157 560.1 517 55.1
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 7.4e-154 548.1 360 76.1
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 6.9e-144 515.0 330 79.4
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 2.5e-138 496.5 321 79.1
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 4.0e-115 419.5 249 81.9
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 8.8e-115 418.3 249 81.5
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 5.3e-112 409.1 428 56.8
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 3.0e-107 393.3 506 45.3
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.7e-102 377.5 240 79.6
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 5.0e-102 375.9 483 45.1
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 3.0e-86 323.6 485 41.2
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 7.3e-77 292.4 340 51.8
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 2.6e-74 283.9 173 80.9
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.1e-51 208.8 477 35.4
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-51 208.4 493 33.5
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.5e-50 204.9 113 90.3
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 2.6e-50 204.1 199 58.3
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.0e-46 192.2 496 32.1
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 6.7e-38 162.9 467 32.8
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 2.5e-37 161.0 289 39.1
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 3.3e-37 160.6 449 32.7
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 5.3e-35 153.3 115 65.2
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 3.4e-34 150.6 451 32.2
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-29 135.2 295 35.6
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 2.5e-29 134.4 334 34.7
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 5.7e-29 133.3 86 72.1
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.8e-28 131.0 276 37.0
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 3.7e-28 130.6 276 37.3
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 1.9e-24 118.2 364 31.0
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 1.9e-24 118.2 219 40.2
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 3.2e-24 117.5 275 32.0
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 5.5e-24 116.7 193 42.0
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 2.5e-21 107.8 59 84.7
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 5.7e-21 106.7 358 30.4
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 7.4e-21 106.3 206 38.3
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-20 105.1 142 44.4
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 3.7e-20 104.0 207 39.1
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 1.8e-19 101.7 404 29.2
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 2.4e-19 101.3 74 64.9
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 5.3e-19 100.1 142 43.0
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 5.3e-19 100.1 231 32.5
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 5.3e-19 100.1 306 29.7
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 3.4e-18 97.4 416 28.1
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 1.0e-14 85.9 326 29.1
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 3.0e-14 84.3 243 32.9
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 4.1e-11 73.9 160 37.5


User provided reference genes

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