Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 4.7e-79 297.7 146 100.0
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 2.4e-75 285.4 146 95.2
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 2.7e-74 282.0 146 93.8
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.5e-72 275.4 146 91.1
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 2.0e-69 265.8 146 86.3
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 4.4e-69 264.6 144 86.1
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 6.2e-63 244.2 146 77.4
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 5.8e-61 237.7 140 76.4
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 9.9e-61 236.9 143 75.5
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.9e-60 235.3 143 76.2
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 4.9e-60 234.6 146 74.7
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 4.9e-60 234.6 143 76.2
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 6.4e-60 234.2 143 74.8
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 5.4e-59 231.1 144 75.7
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 9.3e-59 230.3 140 72.9
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 7.9e-58 227.3 147 73.5
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.3e-57 225.7 145 73.8
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 3.0e-57 225.3 144 72.2
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 8.7e-57 223.8 140 70.7
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.1e-56 223.4 146 70.5
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.1e-56 223.4 137 75.9
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.5e-56 223.0 145 73.1
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 1.9e-56 222.6 143 70.6
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 2.5e-56 222.2 140 72.1
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 3.3e-56 221.9 143 72.0
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 4.3e-56 221.5 146 67.1
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.3e-55 219.9 142 69.0
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.3e-55 219.9 135 74.1
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.6e-55 219.5 146 69.9
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 2.1e-55 219.2 146 69.2
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 2.8e-55 218.8 141 70.9
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 2.8e-55 218.8 139 71.9
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 3.7e-55 218.4 146 69.2
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.8e-55 218.0 146 69.2
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 6.2e-55 217.6 143 67.1
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 6.2e-55 217.6 146 68.5
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 6.2e-55 217.6 146 67.8
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 8.1e-55 217.2 136 72.1
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 8.1e-55 217.2 143 69.2
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 8.1e-55 217.2 146 67.8
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.1e-54 216.9 146 67.8
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 2.4e-54 215.7 146 67.1
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.4e-54 215.7 143 68.5
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.4e-54 215.7 140 71.4
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 3.1e-54 215.3 142 68.3
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 3.1e-54 215.3 143 67.8
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 3.1e-54 215.3 146 68.5
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.9e-54 214.2 140 71.4
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 6.9e-54 214.2 140 71.4
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 9.0e-54 213.8 146 67.1
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 9.0e-54 213.8 146 69.9
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.2e-53 213.4 140 70.0
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.2e-53 213.4 141 69.5
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.0e-53 212.6 143 68.5
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 2.6e-53 212.2 143 67.8
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.6e-53 212.2 143 67.1
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 3.4e-53 211.8 143 67.8
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 3.4e-53 211.8 143 67.8
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 4.5e-53 211.5 143 67.1
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 5.8e-53 211.1 143 67.1
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 5.8e-53 211.1 143 66.4
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 9.9e-53 210.3 142 67.6
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 9.9e-53 210.3 141 68.8
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.7e-52 209.5 146 65.8
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 2.2e-52 209.1 141 68.1
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 6.4e-52 207.6 138 68.8
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 8.4e-52 207.2 141 66.7
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 8.4e-52 207.2 143 65.7
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.1e-51 206.8 143 64.3
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.4e-51 206.5 138 67.4
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.4e-51 206.5 143 65.7
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.4e-51 206.5 121 75.2
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.9e-51 206.1 171 59.6
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.9e-51 206.1 148 65.5
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.9e-51 206.1 141 66.0
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.9e-51 206.1 141 66.0
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.9e-51 206.1 138 68.1
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.9e-51 206.1 138 68.1
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 2.4e-51 205.7 143 64.3
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.4e-51 205.7 144 67.4
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 2.4e-51 205.7 143 66.4
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 3.2e-51 205.3 121 74.4
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 3.2e-51 205.3 141 65.2
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 4.2e-51 204.9 140 65.0
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 7.1e-51 204.1 165 59.4
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 9.3e-51 203.8 145 68.3
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 9.3e-51 203.8 145 68.3
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.6e-50 203.0 141 65.2
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 2.1e-50 202.6 146 64.4
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 2.1e-50 202.6 135 68.1
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 2.1e-50 202.6 143 65.7
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 4.6e-50 201.4 159 61.0
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.0e-49 200.3 136 66.2
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.3e-49 199.9 146 63.7
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.3e-49 199.9 138 62.3
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 5.1e-49 198.0 133 66.2
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 5.1e-49 198.0 147 65.3
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 6.7e-49 197.6 122 73.0
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 8.7e-49 197.2 144 63.2
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.1e-48 196.8 140 64.3
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.1e-48 196.8 138 61.6
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 1.5e-48 196.4 121 73.6
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.5e-48 195.7 143 66.4
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 4.3e-48 194.9 139 63.3
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 4.3e-48 194.9 143 62.2
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 4.3e-48 194.9 145 64.1
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 9.6e-48 193.7 146 59.6
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.3e-47 193.4 140 63.6
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.6e-47 193.0 143 62.2
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 3.7e-47 191.8 136 64.0
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.7e-47 191.8 144 59.0
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.8e-47 191.4 130 66.2
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 6.2e-47 191.0 140 61.4
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 8.2e-47 190.7 147 61.2
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 8.2e-47 190.7 117 74.4
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.4e-46 189.9 141 60.3
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 1.8e-46 189.5 147 62.6
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 1.8e-46 189.5 136 63.2
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.1e-46 188.7 137 62.8
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 9.0e-46 187.2 111 78.4
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 2.6e-45 185.7 137 61.3
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 7.6e-45 184.1 117 70.9
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 7.6e-45 184.1 117 70.9
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.0e-44 183.7 210 47.1
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.0e-44 183.7 143 58.7
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.3e-44 183.3 121 68.6
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.2e-42 176.8 115 68.7
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 4.6e-42 174.9 141 58.9
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.3e-39 166.8 141 55.3
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 2.4e-38 162.5 112 65.2
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 3.1e-38 162.2 114 62.3
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.9e-35 152.9 136 52.9
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.6e-34 148.3 125 56.8
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.6e-34 148.3 125 56.8
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 6.1e-34 147.9 140 50.7
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.4e-33 146.7 99 65.7
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.1e-30 137.1 131 50.4
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 2.4e-30 136.0 138 48.6
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.2e-29 133.7 85 72.9
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 5.5e-27 124.8 141 44.7
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 7.9e-26 120.9 99 59.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 7.9e-26 120.9 99 58.6
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 2.6e-24 115.9 148 45.3
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.6e-24 115.9 127 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 4.4e-24 115.2 130 43.1
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 2.8e-23 112.5 87 59.8
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.4e-22 110.2 126 43.7
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.6e-21 105.9 100 48.0
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 3.4e-21 105.5 137 39.4
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.7e-20 103.2 133 39.8
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.2e-19 99.0 143 38.5
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 3.6e-18 95.5 112 46.4
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 9.7e-16 87.4 54 70.4
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 4.8e-15 85.1 61 63.9
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 4.8e-15 85.1 99 45.5
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 4.8e-15 85.1 107 40.2
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 6.3e-15 84.7 59 66.1
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 8.2e-15 84.3 55 67.3
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 8.2e-15 84.3 55 67.3
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 8.2e-15 84.3 55 67.3
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 1.1e-14 84.0 55 67.3
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 3.5e-13 79.0 83 45.8
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 1.5e-11 73.6 49 65.3
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 3.6e-10 68.9 117 36.8
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 4.8e-07 58.5 41 65.9
Rhsim08G0023200 Rhododendron simsii HOM05D000230 ORTHO05D339814 6.3e-07 58.2 39 66.7
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 4.1e-06 55.5 41 51.2


User provided reference genes

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